Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B12
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7588| Best HMM Match : DcpS (HMM E-Value=0)                         72   5e-13
SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7)                     34   0.088
SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)                     28   5.8  
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
          Length = 446

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 61/186 (32%), Positives = 84/186 (45%)
 Frame = +2

Query: 98  NQLELKDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSKET 277
           N  E+KD ++    N     K     GKF+     A++L EK  F   +L      SK+T
Sbjct: 188 NDREMKDVIILIFAN-----KQDLPDGKFQSCDDDAVVLLEKTPFSARNLPI--VLSKDT 240

Query: 278 QLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLT 457
           +L     ND+YG +              I YPA   +  K           T  +Y   T
Sbjct: 241 KLSVDMRNDVYGQY--------------IGYPAPTANTIK-----------TTVIYPA-T 274

Query: 458 LPHLEKEQFNLQWVYNILXGKSXQXRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIV 637
             H+     + QWVYNIL  K+   R+V ++   + GFVLLPD+KWD    E LYL+AI 
Sbjct: 275 AQHIA----STQWVYNILEKKAETERVVFEDGDPETGFVLLPDMKWDQQQVENLYLIAIC 330

Query: 638 RQRDIK 655
            +R IK
Sbjct: 331 HKRGIK 336


>SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7)
          Length = 209

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +2

Query: 146 NTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSK-ETQLKTFFENDIYGNFE 322
           N  R   C V +  ++    LIL   NAF +ND  +EG+ S  E   K   E  I   + 
Sbjct: 43  NKGRMQVCTVLRSTERHCKKLILAHGNAFSKND-DDEGFISDLEMSTKLSDEKPIQKTYN 101

Query: 323 CFPPSTINGVKTTI 364
             P     GVK  I
Sbjct: 102 SIPRPLYPGVKANI 115


>SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 612

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 143 CSIFSPKQSLSILTDCHLELLPFSLSIFN----LLQRCSLTSSFRQPS 12
           CS+ SP    S L      L PF L++F+     LQ CSL S +  PS
Sbjct: 131 CSLLSPYYGPSSLLPFLPLLRPFKLALFSPLTTALQTCSLLSPYYDPS 178


>SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)
          Length = 1189

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 95  DNQLELKDFVLEKILNNNTNR---KTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYF 265
           D+++E +   +EK L  +  +   +  C   K   +SG+ LI  +    K  +  +E   
Sbjct: 223 DDEVEEEQVDVEKPLERDAPQPIHEEICAEIKETQESGIELIWMDDEQEKPRNTPDENQI 282

Query: 266 SKETQLKTFFENDIYGN 316
             +  L+  FEN+I  N
Sbjct: 283 DHDKVLEGMFENEISKN 299


>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2123

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +2

Query: 398  FSQQEVHIVLETPELYKKLTLPHLEKEQFNLQWVYNILXGKSXQXRIVHDNKSEKEGFV- 574
            F  Q  H+V    E       PHL+K++  L  V      +    R+ ++N   + G V 
Sbjct: 1963 FFTQRSHLVRPKLEYANSAWYPHLQKDKHRLDMV------QRTAARVCYNNYLREPGVVT 2016

Query: 575  -LLPDLKWDGLT-KETLYLLAIVRQ 643
             +L +L+W  L  + TL  +++  Q
Sbjct: 2017 NMLRELEWPSLEGRRTLSRMSMFHQ 2041


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,127,867
Number of Sequences: 59808
Number of extensions: 414788
Number of successful extensions: 983
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)