Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_B12
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 29 2.7
At1g09510.1 68414.m01066 cinnamyl-alcohol dehydrogenase family /... 29 3.6
At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family pr... 28 4.7
At4g32320.1 68417.m04597 peroxidase family protein similar to L-... 28 6.2
At1g23160.1 68414.m02894 auxin-responsive GH3 family protein sim... 28 6.2
At2g01420.2 68415.m00063 auxin transport protein, putative simil... 27 8.2
At2g01420.1 68415.m00062 auxin transport protein, putative simil... 27 8.2
At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3... 27 8.2
At1g23080.1 68414.m02885 auxin efflux carrier protein, putative ... 27 8.2
At1g09490.1 68414.m01063 cinnamyl-alcohol dehydrogenase family /... 27 8.2
At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /... 27 8.2
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 433 SFQHNMNFLLAKFGNMLISGWVDY--CSFHTVYSRRRETLEVSVNIVLEKRFQLS 275
S HNMN L +G+ L+ WV + C + + +R E+S + QLS
Sbjct: 444 SLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEISACMGSHSSSQLS 498
>At1g09510.1 68414.m01066 cinnamyl-alcohol dehydrogenase family /
CAD family similar to cinnamyl alcohol dehydrogenase,
Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
unguiculata [gi:1854445]
Length = 322
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 86 TLNDNQLELKDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYF 265
T+ D Q+EL D ++ LN V + S +A +LF + NDL +E F
Sbjct: 91 TVTDPQIELIDPAVKGTLNVLKTCAKVSSVKRVIVTSSMAAVLFREPTLGPNDLVDESCF 150
Query: 266 S 268
S
Sbjct: 151 S 151
>At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 509
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 354 KLQ*STQP-LISILPNLASKKFILCW 428
KL TQP L +++PNLA K IL W
Sbjct: 51 KLHDGTQPDLSTVIPNLAMKSTILSW 76
>At4g32320.1 68417.m04597 peroxidase family protein similar to
L-ascorbate peroxidase [Arabidopsis thaliana]
gi|1523789|emb|CAA66925; contains Pfam profile PF00141:
Peroxidase
Length = 329
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 281 LKTF-FENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQ 406
+KTF F D + +F+ F + KT ++ PAT+KH+ + S+
Sbjct: 9 VKTFLFRCDSFSSFK-FKCKFESPAKTRLLSPATEKHVVRSSR 50
>At1g23160.1 68414.m02894 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591, auxin-responsive GH3 homologue [Arabidopsis
thaliana] GI:11041726; contains Pfam profile PF03321:
GH3 auxin-responsive promoter
Length = 578
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 71 MKTATTLNDNQLELKDFVLEKIL--NNNTNRKTACVVGKFKDKS 196
MK L N +++D VLE+IL N NTN +G F +S
Sbjct: 15 MKVLEDLTSNVTQIQDNVLEEILTLNANTNYLQKFFLGSFDKES 58
>At2g01420.2 68415.m00063 auxin transport protein, putative similar
to auxin transport protein PIN7[Arabidopsis thaliana]
gi|5817305|gb|AAD52697
Length = 616
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 125 KQSLSILTDCHLELLPFSLSIFNLLQ 48
+QS+SIL+D L + FSL +F LQ
Sbjct: 498 QQSISILSDAGLGMAMFSLGLFMALQ 523
>At2g01420.1 68415.m00062 auxin transport protein, putative similar
to auxin transport protein PIN7[Arabidopsis thaliana]
gi|5817305|gb|AAD52697
Length = 612
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 125 KQSLSILTDCHLELLPFSLSIFNLLQ 48
+QS+SIL+D L + FSL +F LQ
Sbjct: 494 QQSISILSDAGLGMAMFSLGLFMALQ 519
>At1g70940.1 68414.m08184 auxin transport protein, putative (PIN3)
similar to auxin transport protein [Arabidopsis
thaliana] gi|5817301|gb|AAD52695
Length = 640
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 125 KQSLSILTDCHLELLPFSLSIFNLLQ 48
+QS+SIL+D L + FSL +F LQ
Sbjct: 522 QQSISILSDAGLGMAMFSLGLFMALQ 547
>At1g23080.1 68414.m02885 auxin efflux carrier protein, putative
similar to efflux carrier of polar auxin transport
[Brassica juncea] gi|12331173|emb|CAC24691
Length = 619
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 125 KQSLSILTDCHLELLPFSLSIFNLLQ 48
+QS+SIL+D L + FSL +F LQ
Sbjct: 501 QQSISILSDAGLGMAMFSLGLFMALQ 526
>At1g09490.1 68414.m01063 cinnamyl-alcohol dehydrogenase family /
CAD family similar to cinnamyl alcohol dehydrogenase,
Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
unguiculata [gi:1854445]; Location of EST gb|H37170,
gb|H77227 and gb|AA605565
Length = 322
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +2
Query: 86 TLNDNQLELKDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYF 265
T+ D Q EL D L+ +N K V + S A +L + NDL +E +F
Sbjct: 91 TVTDPQTELIDPALKGTINVLNTCKQVSSVKRVILTSSTAAVLSRQPPIGPNDLVDETFF 150
Query: 266 S 268
S
Sbjct: 151 S 151
>At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /
CAD family similar to cinnamyl alcohol dehydrogenase,
Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
unguiculata [gi:1854445]
Length = 369
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 86 TLNDNQLELKDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYF 265
T+ D Q EL D L+ +N K V + S A +LF + + +D+ +E +F
Sbjct: 138 TVKDPQTELIDPALKGTMNVLNTCKETPSVRRVILTSSTAAVLFRQPPVEASDVVDETFF 197
Query: 266 S 268
S
Sbjct: 198 S 198
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,160,525
Number of Sequences: 28952
Number of extensions: 288686
Number of successful extensions: 678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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