Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B10
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.59 
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   3.1  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    26   5.5  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   7.2  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    25   9.5  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 117

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 20  KRNERRQNSNFERFLKKK 73
           K+ +R +NSNF +FLKKK
Sbjct: 100 KKGKRAKNSNFSKFLKKK 117


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 486 EPQARQVPQLQPSHAVIARPSYSSNGGEASVGA---ALAVSDNGANSANTFNHEL 641
           +PQ  + P    S     +PSY SN    S G+    + + DNG + A+    E+
Sbjct: 799 KPQGIRTPTKSTSVHTRRKPSYGSNSTTDSYGSVPDTVPLDDNGESPASNLAFEI 853


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 569 LTTIRRVAWTRDHCMRRLELGNLSRLRF 486
           LTT+R V   + H  +RLE+G+L  + +
Sbjct: 314 LTTLRTVPSFQRHIEQRLEIGDLESINY 341


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 8   GPAAKRNERRQNSNFERFLKKKNLNSSILVPVFLVGS 118
           GPAAK+ +++ +SN     K + L   ++V     GS
Sbjct: 232 GPAAKKEKQQASSNAPSSPKTRTLKGGVVVTDVKTGS 268


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 483 LEPQARQVPQLQPSHAVIARPSYSSNGGEASVGAALAVSDNGANSANTF 629
           + P    +P+   S+     PSYS  G  A+  ++ + +DN  NS +T+
Sbjct: 11  VSPHMYMLPEESNSNTATNAPSYSVGGTTANSYSSNSYNDNN-NSNSTY 58


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -1

Query: 308 RFVFVLLGLFN--WGDLFLFSGIPIN 237
           R+VF+++GL +  WG +F+F  IP N
Sbjct: 235 RYVFIVIGLMSLGWGVVFVF--IPSN 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,007
Number of Sequences: 5004
Number of extensions: 35497
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)