Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_B10
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1809 - 40029628-40030539 32 0.46
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 31 0.80
09_03_0002 - 11387119-11387780,11388756-11388954,11389033-113891... 31 1.1
06_01_1005 - 7810210-7810907,7811005-7811080,7811180-7811368,781... 29 2.4
11_04_0297 + 16050333-16050348,16050564-16052518 29 4.3
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 29 4.3
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 28 5.6
06_03_0039 + 15791968-15792036,15793317-15793847,15799797-158001... 27 9.9
03_01_0092 - 731069-731434,731569-733080 27 9.9
02_05_1226 + 35071407-35072001,35072139-35072836 27 9.9
>01_06_1809 - 40029628-40030539
Length = 303
Score = 31.9 bits (69), Expect = 0.46
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3
Query: 540 RPSYSSNGGEASVGAALAVSDNGANSANTFNH 635
+P+ S++GG GA L+ S++G+N +N +N+
Sbjct: 76 KPAASNSGGGGGGGATLSSSNSGSNHSNKYNY 107
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 31.1 bits (67), Expect = 0.80
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +1
Query: 247 IPENRNKSPQLKSPNKTKTKRPLXERTSIDLGKCFHLTLRNF*TSSQKGKHLFQVINYFS 426
+ E+ KS ++K P K++ L RT + G + +++NF S+Q+G+ F
Sbjct: 168 VGESSRKSEEIKDP---KSREDLVTRTQNEKGTT-NQSVQNFSVSNQRGREGFSAAPALE 223
Query: 427 NCTRIRNRMTNKISNSS 477
N N+M + N+S
Sbjct: 224 NERTAANKMHSHSINAS 240
>09_03_0002 -
11387119-11387780,11388756-11388954,11389033-11389106,
11389840-11390323,11390439-11390450
Length = 476
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 394 KHLFQVINYFSNCTRIRNRMTNKISNSSITWNLKRDKF 507
+ +F +NY N ++RNRM N+ N + LKRD F
Sbjct: 419 ERVFSTMNYVKN--KLRNRMGNEYLNDCLVTFLKRDIF 454
>06_01_1005 -
7810210-7810907,7811005-7811080,7811180-7811368,
7811507-7811728,7811906-7812004,7812112-7812192,
7812384-7812679,7812777-7813116,7813221-7813284,
7813511-7813735,7816958-7817244
Length = 858
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 347 HLPRSILVRSXNGRFVFVLLGLFNWGDLFLFSG 249
H P SI +R F+F LLG F W ++ G
Sbjct: 163 HNPTSIALRYCKSSFIFDLLGCFPWDAIYKACG 195
>11_04_0297 + 16050333-16050348,16050564-16052518
Length = 656
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 394 KHLFQVINYFSNCTRIRNRMTNKISNSSITWNLKRDKFPN 513
K +F +N T++RN M++K+ N+ + ++RD F N
Sbjct: 596 KRVFSAMNLVK--TKVRNSMSDKLLNNCLVTLIERDIFSN 633
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 540 RPSYSSNGGEASVGAALAVSDNGA 611
RPS+ NGG + G A ++SD A
Sbjct: 240 RPSFKENGGTVTAGNASSISDGAA 263
>02_01_0293 +
1955439-1956457,1957002-1957322,1957405-1957411,
1957954-1958041,1958143-1958324,1958508-1958644,
1958790-1958856,1959132-1959246,1959390-1959501,
1960420-1960495,1960576-1960758,1961166-1961326,
1961463-1961532,1962721-1962928,1963015-1963304,
1963388-1963509,1963605-1963749,1964040-1964113,
1964464-1964911
Length = 1274
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/45 (26%), Positives = 28/45 (62%)
Frame = +3
Query: 474 FYYLEPQARQVPQLQPSHAVIARPSYSSNGGEASVGAALAVSDNG 608
F +E Q+R + Q+Q +H+VI+ + + N + ++ ++S++G
Sbjct: 378 FRNIEKQSRDLGQIQSTHSVISDTNTNQNMYQGTMTYLTSISEDG 422
>06_03_0039 +
15791968-15792036,15793317-15793847,15799797-15800105,
15800256-15800772,15800964-15801163,15801303-15801398
Length = 573
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 456 KQNLQQFYYLEPQARQVPQLQPSHAVIARPSYSSNGGEASVGAALAVSDNGA 611
K+N+ + R + P H VI S SS G +A+ G L S + A
Sbjct: 26 KKNVSGSMLIRSPPRPWRRRLPQHVVIVDASSSSRGPKAATGGRLETSTDAA 77
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 501 QVPQLQPSHAVIARPSYSSNGGEASVGAALAVSDNGANSANTF 629
Q PQLQ + V+ RP+ S GG + A S +F
Sbjct: 578 QRPQLQNQNVVVGRPNASGGGGGGAPTTPAGPPPPAATSGTSF 620
>02_05_1226 + 35071407-35072001,35072139-35072836
Length = 430
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 573 RPHHHSKSSLDARSLHATAGVGE 505
+PHHH SSL A L+ G G+
Sbjct: 4 KPHHHGSSSLVAEELNLLHGGGD 26
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,147,295
Number of Sequences: 37544
Number of extensions: 237341
Number of successful extensions: 769
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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