Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_B10
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64858-9|AAB18288.2| 398|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL132865-14|CAB60610.1| 363|Caenorhabditis elegans Hypothetical... 29 3.8
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 29 3.8
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 29 3.8
U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe... 28 6.7
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 28 6.7
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 28 6.7
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 28 6.7
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 28 6.7
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 28 6.7
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 28 6.7
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 28 6.7
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 28 6.7
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 28 6.7
AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical ... 28 6.7
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 6.7
>U64858-9|AAB18288.2| 398|Caenorhabditis elegans Hypothetical
protein C16D9.1 protein.
Length = 398
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 280 KSPNKTKTKRPLXERTSIDLGKCFHLTL 363
KSPNK+ RPL ++ L KCF L
Sbjct: 24 KSPNKSLFARPLISLRNLSLDKCFSACL 51
>AL132865-14|CAB60610.1| 363|Caenorhabditis elegans Hypothetical
protein Y62E10A.17 protein.
Length = 363
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 418 YFSNCTRIRNRMTN--KISNSSITWNLKRDKFPNSSRRMQ 531
YF +R R+ + K+++SSI NLKR K N M+
Sbjct: 163 YFVTVEEMRRRLQSPEKLNSSSIACNLKRPKLKNGGELMR 202
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 459 QNLQQFYYLEPQARQVPQLQPSHAVIARPSYSSNGGEA 572
Q QQ Y +PQ + +PQ+QP P+ S GG+A
Sbjct: 2086 QPQQQQQYYQPQQQALPQVQPQ---FQTPASSYGGGQA 2120
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 459 QNLQQFYYLEPQARQVPQLQPSHAVIARPSYSSNGGEA 572
Q QQ Y +PQ + +PQ+QP P+ S GG+A
Sbjct: 711 QPQQQQQYYQPQQQALPQVQPQ---FQTPASSYGGGQA 745
>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform f protein.
Length = 1418
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 20 KRNERRQNSNFERFLKKKNLNSSILVPVFLVG 115
KRNE +QN+ + LKK L++ +FL+G
Sbjct: 1064 KRNEAKQNTFVRKLLKKTCLHNRTEFSLFLMG 1095
>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform c protein.
Length = 1852
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 20 KRNERRQNSNFERFLKKKNLNSSILVPVFLVG 115
KRNE +QN+ + LKK L++ +FL+G
Sbjct: 1064 KRNEAKQNTFVRKLLKKTCLHNRTEFSLFLMG 1095
>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform a protein.
Length = 1837
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 20 KRNERRQNSNFERFLKKKNLNSSILVPVFLVG 115
KRNE +QN+ + LKK L++ +FL+G
Sbjct: 1064 KRNEAKQNTFVRKLLKKTCLHNRTEFSLFLMG 1095
>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform d protein.
Length = 1885
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 20 KRNERRQNSNFERFLKKKNLNSSILVPVFLVG 115
KRNE +QN+ + LKK L++ +FL+G
Sbjct: 1112 KRNEAKQNTFVRKLLKKTCLHNRTEFSLFLMG 1143
>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform e protein.
Length = 1844
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 20 KRNERRQNSNFERFLKKKNLNSSILVPVFLVG 115
KRNE +QN+ + LKK L++ +FL+G
Sbjct: 1071 KRNEAKQNTFVRKLLKKTCLHNRTEFSLFLMG 1102
>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
sensitive calciumchannel alpha1 subunit isoform D
protein.
Length = 1844
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 20 KRNERRQNSNFERFLKKKNLNSSILVPVFLVG 115
KRNE +QN+ + LKK L++ +FL+G
Sbjct: 1071 KRNEAKQNTFVRKLLKKTCLHNRTEFSLFLMG 1102
>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform C protein.
Length = 1852
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 20 KRNERRQNSNFERFLKKKNLNSSILVPVFLVG 115
KRNE +QN+ + LKK L++ +FL+G
Sbjct: 1064 KRNEAKQNTFVRKLLKKTCLHNRTEFSLFLMG 1095
>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform B protein.
Length = 1885
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 20 KRNERRQNSNFERFLKKKNLNSSILVPVFLVG 115
KRNE +QN+ + LKK L++ +FL+G
Sbjct: 1112 KRNEAKQNTFVRKLLKKTCLHNRTEFSLFLMG 1143
>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform A protein.
Length = 1837
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 20 KRNERRQNSNFERFLKKKNLNSSILVPVFLVG 115
KRNE +QN+ + LKK L++ +FL+G
Sbjct: 1064 KRNEAKQNTFVRKLLKKTCLHNRTEFSLFLMG 1095
>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-dependent
calcium channelalpha13 subunit protein.
Length = 1837
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 20 KRNERRQNSNFERFLKKKNLNSSILVPVFLVG 115
KRNE +QN+ + LKK L++ +FL+G
Sbjct: 1064 KRNEAKQNTFVRKLLKKTCLHNRTEFSLFLMG 1095
>AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical
protein VC5.2 protein.
Length = 588
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 403 FQVINYFSNCTRIRNRMTNKISNS--SITWNLKRDKFPNSSRRM 528
F ++N CT R+++ K+SN+ N K D+F +S ++
Sbjct: 33 FNLVNRLDQCTLWRSKLDKKVSNTLDHFLMNSKFDEFREASTQL 76
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 489 PQARQVPQLQPSHAVIARPSYSSNGGEASVGAALAVSDNGANS 617
PQA PQ P+ A A Y++ GG + G GA S
Sbjct: 387 PQAAPAPQAAPAPAAPAGGGYNAGGGGGAGGGGGYAGGAGAGS 429
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,811,800
Number of Sequences: 27780
Number of extensions: 202472
Number of successful extensions: 692
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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