Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B10
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot...    30   1.5  
At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative ...    29   3.6  
At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative ...    29   3.6  
At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein ...    28   6.2  
At5g41250.1 68418.m05013 exostosin family protein contains Pfam ...    27   8.2  

>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 813

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 253 ENRNKSPQLKSPNKTKTKRPLXERTSIDLGKC 348
           E   ++P +  P++T T+RPL    S  LG+C
Sbjct: 697 EEEPEAPAVPKPDETSTERPLDALGSFKLGEC 728


>At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative /
           3-ketoacyl-CoA thiolase, putative strong similarity to
           Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
           sativus] GI:1542941; contains InterPro accession
           IPR002155: Thiolase
          Length = 403

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 540 RPSYSSNGGEASVGAALAVSDNGA 611
           RPS+  NGG  + G A ++SD  A
Sbjct: 242 RPSFKENGGTVTAGNASSISDGAA 265


>At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative /
           3-ketoacyl-CoA thiolase, putative strong similarity to
           Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
           sativus] GI:1542941; contains InterPro accession
           IPR002155: Thiolase
          Length = 398

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 540 RPSYSSNGGEASVGAALAVSDNGA 611
           RPS+  NGG  + G A ++SD  A
Sbjct: 237 RPSFKENGGTVTAGNASSISDGAA 260


>At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 257

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 180 EDKDKEKRQTNDERVLTHFIYRN 248
           +DKDK+K   N+ R   H+ +RN
Sbjct: 81  KDKDKDKDNNNNRRFECHYCFRN 103


>At5g41250.1 68418.m05013 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 561

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 478 ITWNLKRDKFPNSSRRMQ*SRVQATLRMVVRPQ 576
           ITW+ +RDK P  SR ++   +Q   ++++  Q
Sbjct: 315 ITWDFRRDKDPWGSRFLELQEMQNPTKLLIERQ 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,241,575
Number of Sequences: 28952
Number of extensions: 189474
Number of successful extensions: 560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)