Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B05
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    69   4e-13
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    49   5e-07
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    31   0.19 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   9.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.4  

>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 69.3 bits (162), Expect = 4e-13
 Identities = 33/76 (43%), Positives = 46/76 (60%)
 Frame = +3

Query: 420 IYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSXI 599
           I +  +  IG TPL+RLN +  + G  C + AK EF NPGGS+KDR +Y +V +A+K   
Sbjct: 13  IVSGFIGAIGRTPLIRLNTLSNETG--CNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGK 70

Query: 600 AKSGTRFIEPTSXNTG 647
              G   +E T+ NTG
Sbjct: 71  LSRGGTIVEGTAGNTG 86


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
 Frame = +3

Query: 420 IYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKS-- 593
           I N +   IG+T +VR+  + +  G  C++ AK EF+NPG S KDR++  M+  A+++  
Sbjct: 42  IVNGVEGLIGNTKMVRIKSLSQATG--CDILAKAEFLNPGNSPKDRVALQMIRTAEENGD 99

Query: 594 XIAKSGTRFIEPTSXNTG 647
            +        E T+ +TG
Sbjct: 100 LVPYQSNAVYEGTAGSTG 117


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 441 TIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPG 539
           T G TP+  + R+ K  G + E+FAK E  N G
Sbjct: 12  TFGPTPITSMKRLSKTLGGKVEIFAKREDCNSG 44


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 113  LARLQSRGNENRFIIERNSRVD*N*VIWTIY 205
            L+ +++   E+ FI E + RVD N  IW +Y
Sbjct: 1091 LSTIRAYDMEDTFISENDIRVDTNHRIWFLY 1121


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 416 VASKTS*IGHFLDQN*SSFKQY*IQLTNALPIKFLLINIRTAR 288
           VA +   IG F     +S  +  I++ NA+  + L +N+RTAR
Sbjct: 278 VAQRVDSIGRFAVATSASVHEA-IRIANAISKENLAVNVRTAR 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,464
Number of Sequences: 5004
Number of extensions: 46142
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)