Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_B05
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 62 4e-10
03_02_0162 + 6053144-6053365,6053474-6053548,6054477-6054623,605... 60 1e-09
06_03_0491 - 21383036-21383161,21383246-21383439,21383627-213837... 59 3e-09
12_02_1181 - 26732439-26732528,26732883-26732963,26733104-267331... 58 8e-09
06_03_0487 - 21352955-21353080,21353164-21353357,21353815-213539... 56 3e-08
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 54 1e-07
04_01_0339 - 4429742-4429840,4429932-4430012,4430232-4430291,443... 53 2e-07
06_03_0486 - 21344680-21344805,21344922-21345115,21350027-213501... 53 2e-07
01_06_1119 - 34640611-34640721,34640995-34641075,34641437-346414... 52 5e-07
02_02_0105 + 6810839-6810913,6811005-6811132,6811562-6811764,681... 44 8e-05
01_07_0387 - 43224718-43224810,43224990-43225070,43225676-432257... 44 8e-05
06_03_0834 - 25206825-25207075,25207326-25207424,25207531-252082... 29 4.2
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 28 7.4
09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148... 27 9.7
>03_05_1124 +
30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 62.1 bits (144), Expect = 4e-10
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +3
Query: 420 IYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEA-QKSX 596
I +++ IG+TPLV LN++ G E ++ AK E + P S+KDRI Y+M+ +A +K
Sbjct: 8 IASDVTALIGNTPLVYLNKVVD--GCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGL 65
Query: 597 IAKSGTRFIEPTSXNTG 647
I + IEPTS NTG
Sbjct: 66 ITPGKSVLIEPTSGNTG 82
>03_02_0162 +
6053144-6053365,6053474-6053548,6054477-6054623,
6054749-6055300,6055387-6055622,6055914-6056130
Length = 482
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/84 (36%), Positives = 49/84 (58%)
Frame = +3
Query: 393 NSRSFTRNRIYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTM 572
+SRS R ++ IG+TPL+R+N + G CE+ K EF+NPGGS+KDR++ +
Sbjct: 39 SSRSSGRRTRRKGLVEAIGNTPLIRINSLSDATG--CEILGKAEFLNPGGSVKDRVAVKI 96
Query: 573 VLEAQKSXIAKSGTRFIEPTSXNT 644
+ EA +S G E ++ +T
Sbjct: 97 IEEALESGDLLCGGTVTEGSAGST 120
>06_03_0491 -
21383036-21383161,21383246-21383439,21383627-21383785,
21383904-21384029,21384290-21384492,21384691-21384818,
21385691-21385783
Length = 342
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +3
Query: 420 IYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSXI 599
I +NI IG TPL+ + IPK G++ + K E P S+KDR + +M+ +A++ +
Sbjct: 25 IASNIAQLIGWTPLIEMKNIPKKEGIQTRLIGKMETYQPLFSVKDRTALSMIEDAEEKGL 84
Query: 600 AKSG-TRFIEPTSXNTG 647
G T IEPTS N G
Sbjct: 85 ITPGVTTLIEPTSGNLG 101
>12_02_1181 -
26732439-26732528,26732883-26732963,26733104-26733163,
26733372-26733451,26733815-26733866,26733987-26734124,
26734203-26734466,26735895-26735952,26736153-26736262,
26736385-26736432,26736812-26736823
Length = 330
Score = 57.6 bits (133), Expect = 8e-09
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +3
Query: 420 IYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEA-QKSX 596
I ++ IG+TPLV LNR+ G + AK E + P S+KDRI Y+M+ +A +K
Sbjct: 14 IAKDVTELIGNTPLVYLNRVTD--GCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGL 71
Query: 597 IAKSGTRFIEPTSXNTG 647
I + IEPTS NTG
Sbjct: 72 ITPGKSVLIEPTSGNTG 88
>06_03_0487 -
21352955-21353080,21353164-21353357,21353815-21353973,
21354117-21354242,21354502-21354704,21354892-21355019,
21355323-21355565,21356734-21356928
Length = 457
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 402 SFTRNRIYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLE 581
S I +NI IG TPLV + I K+ G++ + K E P S+KDR + M+ +
Sbjct: 134 SSREENIASNITQLIGWTPLVEMKNIAKNEGVQARLVGKMEAYQPLCSVKDRSALRMIED 193
Query: 582 AQKSXIAKSG-TRFIEPTSXNTG 647
A++ + G T IEPTS N G
Sbjct: 194 AEEKGLITPGVTTLIEPTSGNLG 216
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 402 SFTRNRIYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLE 581
S + I +I +G TPL+ LNRI + G+ + K E P S+KDR + M+ +
Sbjct: 16 SSSDEHIATDITQLVGWTPLIELNRIVRKDGVNARIVGKLESYQPLCSVKDRSALRMIED 75
Query: 582 AQKSXIAKSG-TRFIEPTSXNTG 647
A++ + G T +EPTS N G
Sbjct: 76 AEEKGLISPGVTTLVEPTSGNLG 98
>04_01_0339 -
4429742-4429840,4429932-4430012,4430232-4430291,
4430715-4430794,4430923-4430974,4431045-4431182,
4431449-4431712,4432031-4432088,4433261-4433370,
4433604-4433795
Length = 377
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 417 RIYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSX 596
+I ++ IG TP+V LN++ + G + AK EF+ P S+KDR + +M+ +A+K
Sbjct: 57 KIRDSASQLIGRTPMVYLNKVTEGCG--ARIAAKLEFLQPSFSVKDRPAISMLEDAEKKG 114
Query: 597 IAKSG-TRFIEPTSXNTG 647
+ G T IEPTS N G
Sbjct: 115 LITPGKTTLIEPTSGNMG 132
>06_03_0486 -
21344680-21344805,21344922-21345115,21350027-21350185,
21350428-21350553,21350784-21350986,21351169-21351296,
21351631-21351741
Length = 348
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 420 IYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSXI 599
I +N+ IG TPL+ + I K G++ + K E P S+KDR + MV +A++ +
Sbjct: 31 IASNVAQLIGWTPLIEMKNIAKKEGIQARLVGKMEAYQPLFSVKDRTALGMVEDAEEKGL 90
Query: 600 AKSG-TRFIEPTSXNTG 647
G T IEPT N G
Sbjct: 91 ITPGVTTLIEPTGGNLG 107
>01_06_1119 -
34640611-34640721,34640995-34641075,34641437-34641496,
34641596-34641645,34641758-34641809,34642462-34642599,
34642716-34642979,34643057-34643114,34643178-34643287,
34643650-34643925
Length = 399
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +3
Query: 420 IYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEA-QKSX 596
I ++ IG TP+V LN + G + AK E++ P S+KDRI +M+ +A +K
Sbjct: 86 IAQDVTQLIGKTPMVYLNNVVD--GCVANIAAKLEYMGPCRSVKDRIGLSMINDAEEKGL 143
Query: 597 IAKSGTRFIEPTSXNTG 647
I + T +EPT+ NTG
Sbjct: 144 IFPNKTILVEPTTGNTG 160
>02_02_0105 +
6810839-6810913,6811005-6811132,6811562-6811764,
6811829-6811957,6812348-6812506,6812610-6812695,
6812908-6813042
Length = 304
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 420 IYNNILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSXI 599
I +NI IG TPL+ L I K G+ + K E P S+KDR + ++ +A++ +
Sbjct: 19 IASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQPLSSVKDRSALRLIEDAEERGL 78
Query: 600 AKSG-TRFIEPTSXNTG 647
G T TS N G
Sbjct: 79 ISPGITTLAGVTSGNLG 95
>01_07_0387 -
43224718-43224810,43224990-43225070,43225676-43225735,
43227129-43227208,43227285-43227336,43227412-43227549,
43227627-43227944,43229381-43229438,43229520-43229629,
43230041-43230280
Length = 409
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +3
Query: 444 IGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSXIAKSG 611
IG TP+V LN I K G + AK E + P S+KDRI Y+M+ +A++ + G
Sbjct: 82 IGKTPMVYLNNIVK--GCVANVAAKLEIMEPCCSVKDRIGYSMISDAEEKGLITPG 135
>06_03_0834 -
25206825-25207075,25207326-25207424,25207531-25208285,
25209073-25209388,25210472-25210514
Length = 487
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 453 TPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIK 551
TPL+R R+ K G +++ K E +P GS K
Sbjct: 116 TPLIRARRLEKLLGTPAKIYYKYEGTSPAGSHK 148
>02_05_0492 -
29476883-29476949,29477030-29477166,29477292-29477383,
29477490-29477587,29477677-29477804,29477883-29478026,
29478108-29478397,29478553-29478739,29479085-29479210,
29480488-29480538,29480952-29481002,29482639-29484054
Length = 928
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 114 LLDYNHEEMRIGSLSNVTAV*IEIKLSGRSTVCQALIKKPS 236
L YN E+ +G VT + L G+ T+C+ L + S
Sbjct: 820 LRQYNREQDYLGDPKGVTVQILSRSLEGKLTICRCLFMEKS 860
>09_04_0117 +
14813472-14814113,14814194-14814404,14814552-14814846,
14815059-14815448,14815528-14815605,14815692-14815926
Length = 616
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +1
Query: 385 KCPIQEVLLATEFIITYXKLSVIHRLLDSIEFQKTMA----WNVKCLQNANS*IPVVRLK 552
KC ++++LL + ++ ++ +D + +A WN + + + + P+VR K
Sbjct: 539 KCNMEDILLEMDRVLRPEGAVIMRDDVDILTKVNRLALGMKWNTRLVDHEDG--PMVREK 596
Query: 553 IVFHIQWYW 579
+++ ++ YW
Sbjct: 597 VLYAVKQYW 605
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,604,226
Number of Sequences: 37544
Number of extensions: 252733
Number of successful extensions: 411
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -