Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B05
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)               98   6e-21
SB_32365| Best HMM Match : PALP (HMM E-Value=0.064)                    66   2e-11
SB_18116| Best HMM Match : PALP (HMM E-Value=0)                        66   2e-11
SB_34444| Best HMM Match : Cadherin (HMM E-Value=0.0043)               30   1.9  
SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 45/73 (61%), Positives = 52/73 (71%)
 Frame = +3

Query: 429 NILXTIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSXIAKS 608
           NIL  IGDTPLVR+N I K YGL+CE+ AKCEF N GGS+KDRI   M+ EA++    K 
Sbjct: 3   NILQKIGDTPLVRINNIGKTYGLKCELLAKCEFFNAGGSVKDRIGLRMIEEAEREGRLKP 62

Query: 609 GTRFIEPTSXNTG 647
           G   IEPTS NTG
Sbjct: 63  GDTLIEPTSGNTG 75


>SB_32365| Best HMM Match : PALP (HMM E-Value=0.064)
          Length = 129

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = +3

Query: 483 KDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSXIAKSGTRFIEPTSXNTG 647
           K  GL+CE+ AKCEF+NP GS+KDRI   M+ +A++    K G   IEPTS NTG
Sbjct: 4   KRCGLKCEVVAKCEFMNPVGSLKDRIGVRMIEDAERDNHIKPGDTLIEPTSGNTG 58


>SB_18116| Best HMM Match : PALP (HMM E-Value=0)
          Length = 470

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = +3

Query: 483 KDYGLECEMFAKCEFVNPGGSIKDRISYTMVLEAQKSXIAKSGTRFIEPTSXNTG 647
           K  GL+CE+ AKCEF+NP GS+KDRI   M+ +A++    K G   IEPTS NTG
Sbjct: 4   KRCGLKCEVVAKCEFMNPVGSLKDRIGVRMIEDAERDNHIKPGDTLIEPTSGNTG 58


>SB_34444| Best HMM Match : Cadherin (HMM E-Value=0.0043)
          Length = 205

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 580 SSTIVYEIRSLIEPPGFTNSHFANISHS 497
           SST V     L++PPG  NS  AN+S+S
Sbjct: 5   SSTAVAAALELVDPPGCRNSMNANVSYS 32


>SB_58950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 16  CPANNKLRAVNACQLRLCYHVTHVAVKSRKAP 111
           C   + L   +AC+L  CYH  H   + + AP
Sbjct: 398 CQDISSLYIPHACRLLRCYHTLHWIAEQKPAP 429


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 560 NTIFNRTTGIHEFAFCK-HF-TFQAIVFWNSIESNKRCITDS 441
           N + +R   + E +F K HF TF++++ W +     RC  DS
Sbjct: 227 NFVPSRFASVGEISFGKGHFQTFESVLVWTAGSRRTRCENDS 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,892,087
Number of Sequences: 59808
Number of extensions: 327932
Number of successful extensions: 1261
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)