Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B04
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   3.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   5.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.4  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   9.5  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   9.5  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 330 EEVMAPAVELSLTAPLAKQVQLVATFGSVCDGCQTS*R 217
           +E +   ++ +    +A +V +VA FG V  GC TS R
Sbjct: 197 KESLVDGIKRATDVMIAGKVAVVAGFGDVGKGCSTSLR 234


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -2

Query: 315 PAVELSLTAPLAKQVQLVATFGSVCDGCQTS*RWHVGFLYI 193
           P V +  T+ + +    V+ F ++C        WHVG L +
Sbjct: 176 PQVSVLFTSSVKRSPHGVSWFATICSETHIENEWHVGPLSV 216


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 239  SQTDPKVATS*TCFASGAVKESSTAGAITSSI 334
            S+ DP  A S T  ++ ++  +S +G+ TSS+
Sbjct: 960  SEVDPSTAASATGSSTSSIATASVSGSSTSSV 991


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 106 VALRAELVPAVFFHHNL-NYKSLKRTDVIPNVEETNVPP 219
           + +  EL+PA+    NL NY+S  + D +  + +T V P
Sbjct: 239 IDINNELIPAIIVARNLINYES-NQMDAVKLISDTFVEP 276


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 306 ELSLTAPLAKQVQLVATFGSVC 241
           +L++  PLAK+++ VA  GS C
Sbjct: 63  DLAVNWPLAKKLRNVAVMGSAC 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,447
Number of Sequences: 5004
Number of extensions: 36101
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)