Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B04
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0369 - 8012470-8013120                                           29   2.4  
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638...    28   5.6  
04_04_0708 - 27441373-27442611                                         28   5.6  
06_01_0292 + 2136637-2137050,2137162-2137671                           28   7.4  
05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238     28   7.4  
02_03_0237 - 16723400-16723594,16723658-16723712,16724016-167241...    28   7.4  
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    27   9.8  

>09_02_0369 - 8012470-8013120
          Length = 216

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 498 AHPPVAPEPPRKPFKLFRPYLLEDEDEKRXXIASLPVSN 614
           A PP   EPP KP   F P +L  E       A+ P SN
Sbjct: 61  AQPPPPDEPPLKPPPSFYPAVLPPEPPPPRRPAATPYSN 99


>09_04_0365 -
           16962608-16963174,16963301-16963486,16963824-16963896,
           16964307-16964497,16964982-16965198,16965394-16965797,
           16966593-16966658,16966668-16966721,16966945-16967079,
           16967194-16967391,16967734-16967918,16968990-16969527
          Length = 937

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 474 RRCSPXTLAHPPVAPEPPRKPFK 542
           RR  P T   PP  P PPR P K
Sbjct: 19  RRSKPATAPPPPPPPTPPRPPQK 41


>04_04_0708 - 27441373-27442611
          Length = 412

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 432 ALVQPSTE-PIDLSVRRCSPXTLAHPPVAPEPP 527
           A+  PS+    DL++  CSP  L  PP  P PP
Sbjct: 218 AIPSPSSVLDADLTLSPCSPPLLPPPPPPPPPP 250


>06_01_0292 + 2136637-2137050,2137162-2137671
          Length = 307

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 102 DRRAEGRAGSRRIFPPQFKLQVLE-AYRRDSQCRGNQR-ATARKFGIHRRQIQKWLQ 266
           D  A+G  G +++   + +  VLE  ++  S     Q+ A A + G+  RQ++ W Q
Sbjct: 104 DDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQ 160


>05_04_0411 + 21057838-21058878,21059723-21059926,21060011-21060238
          Length = 490

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 486 PXTLAHPPVAPEPPRKPFKLFRPYLLE 566
           P   A    AP PPR+P +L R Y +E
Sbjct: 140 PAADAAAEAAPAPPRRPAELLRAYTVE 166


>02_03_0237 -
           16723400-16723594,16723658-16723712,16724016-16724126,
           16724545-16724809,16725155-16725716
          Length = 395

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +3

Query: 447 STEPIDLSVRRCSPXTLAHPPVAPEPPRKPFKLFRPYLLEDEDE 578
           ST P        +P     PP++P PP  P     P  + +E E
Sbjct: 150 STTPTPSVPNTAAPPAPPSPPISPTPPGSPLPQISPLRVPNEYE 193


>08_01_0036 -
           267236-268165,268255-268299,268485-268574,269485-269805,
           269895-270098,271532-271664,271810-271881,273106-273168,
           273252-275034,275169-275217
          Length = 1229

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 492 TLAHPPVAPEPPRKPFKLFRPYLL---EDEDEKRXXIASLPVSNTGYV 626
           T   PP  PE  RKP K     LL   ED + K   IA+  +  T YV
Sbjct: 435 TFGWPPGRPEDERKPGKALFFLLLSYEEDSEGKLQLIATKVLEGTHYV 482


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,142,005
Number of Sequences: 37544
Number of extensions: 277511
Number of successful extensions: 1007
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)