Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B04
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family...    30   1.5  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    29   2.7  
At2g40475.1 68415.m04995 expressed protein                             29   2.7  
At3g30320.1 68416.m03828 hypothetical protein                          28   4.7  
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    28   4.7  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   6.2  

>At2g36490.1 68415.m04479 HhH-GPD base excision DNA repair family
           protein (ROS1) similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1393

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 474 RRCSPXTLAHPPVAPEPPRKPFKLFRPYLLEDE 572
           +R    +   PP  P+ P KPF    PY +ED+
Sbjct: 4   QRREESSFQQPPWIPQTPMKPFSPICPYTVEDQ 36


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 447 STEPIDLSVRRCSPXTLAHPPVAPEPPRKP 536
           S+ PID +   CSP +   PP  P PP  P
Sbjct: 363 SSYPIDCASFGCSPPSPPPPPPPPPPPPPP 392


>At2g40475.1 68415.m04995 expressed protein
          Length = 193

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 441 QPSTEPIDLSVRRCSPXTLAHPPVAPEP-PRKPFKLFRPYLLEDEDEKRXXIASLPVSNT 617
           +PS      S    S  + + PP   E  PRK +   R Y+ ED++E+   ++S P S  
Sbjct: 103 RPSFSWSSASSSSSSSYSSSSPPSKVEHRPRKCYSCSRSYVKEDDEEE--IVSSSPTSTL 160

Query: 618 GYVSAFCAS 644
            Y   F +S
Sbjct: 161 CYKRGFSSS 169


>At3g30320.1 68416.m03828 hypothetical protein
          Length = 695

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 217 VARWFPLHWESRLYASRTCSLNCG 146
           + R+ P+H E ++Y SR  S  CG
Sbjct: 651 IERFLPIHLEDKVYFSRASSNRCG 674


>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 468 SVRRCSPXTLAHPPVAPEPPR 530
           +++ C+P T  HPPV P+PP+
Sbjct: 23  TIQACTPCTRPHPPV-PKPPQ 42


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 444 PSTEPIDLSVRRCSPXTLAHPP-VAPEPPRKP 536
           PST P  +S  + SP  +  PP   P PP  P
Sbjct: 564 PSTPPTPISPGQNSPPIIPSPPFTGPSPPSSP 595


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,784
Number of Sequences: 28952
Number of extensions: 200961
Number of successful extensions: 710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)