Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B03
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    43   3e-05
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   3.1  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   7.2  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   7.2  

>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 362 IDFXKENIQPLRGGRNLVQLSTALQAQSDADAQKQLQIQKEEHETAIXNYQX-PDPLEPW 538
           I+  KENI+P + G +   L+ +            LQ ++  HE  I   +   DPL+ W
Sbjct: 16  IEQSKENIEPRKAGHSASALAKSSSRNHTEKEVAGLQKERMGHERKIETSESLDDPLQVW 75

Query: 539 FNYIQWVEQSFPK 577
            +YI+W   +FP+
Sbjct: 76  IDYIKWTLDNFPQ 88


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 53  LVTDNNFYRVMSKRASFWCFSLVVANFFHNFKAYDHQKRC 172
           L + N+  R++  R+SF+C      N +H+F+ ++ +  C
Sbjct: 346 LYSANSQMRLID-RSSFYCIMADFINLYHDFELWEQKINC 384


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 542 NYIQWVEQSFPKHGHEXHIDKLIKXCLQLFE 634
           +Y+QW + + P+ G   H+ ++ K    +FE
Sbjct: 199 DYLQWKDDTLPEIGKLFHLQEVHKEYNPMFE 229


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 267 FCHYFKC*APDLHFYFTQAQFLSIIIVNRIE 175
           +CH+FK     +H +F + + L   ++N  E
Sbjct: 105 YCHHFKLSKVKVHLFFCRLKLLDYGLLNESE 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,227
Number of Sequences: 5004
Number of extensions: 42636
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)