Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B03
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0697 + 5209325-5209557,5209690-5209749,5209894-5210038,521...    73   2e-13
12_01_0160 - 1212295-1213586,1213828-1213976,1214288-1214445,121...    36   0.021
11_01_0161 - 1327286-1328592,1328819-1329000,1329279-1329436,132...    36   0.021
05_05_0251 + 23616546-23617760                                         29   3.2  
08_02_1148 - 24693323-24693877,24694092-24694315,24694519-246946...    29   4.3  
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444...    27   9.9  

>02_01_0697 +
           5209325-5209557,5209690-5209749,5209894-5210038,
           5210149-5210306,5210990-5211071,5211154-5211220,
           5211302-5211347,5211441-5211606,5211729-5211814,
           5211916-5211996,5212084-5212144
          Length = 394

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 33/92 (35%), Positives = 56/92 (60%)
 Frame = +2

Query: 374 KENIQPLRGGRNLVQLSTALQAQSDADAQKQLQIQKEEHETAIXNYQXPDPLEPWFNYIQ 553
           KEN++PL+ GRN+  L+ AL+A +D   +  L   + +   AI  Y   DPL+PW + I+
Sbjct: 42  KENVRPLKRGRNVGLLNRALKAHADPAQRAALLAARRKMIEAIDEYSGEDPLQPWIDCIK 101

Query: 554 WVEQSFPKHGHEXHIDKLIKXCLQLFENDNKY 649
           WV++SFP  G    +  + + C++ F +D++Y
Sbjct: 102 WVQESFPTGGDCSGLVVIYEQCVRAFWHDDRY 133


>12_01_0160 -
           1212295-1213586,1213828-1213976,1214288-1214445,
           1214860-1215004,1215102-1215226
          Length = 622

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 500 IXNYQXPDPLEPWFNYIQWVEQSFPKHGHEXHIDKLIKXCLQLFENDNKY 649
           I +Y   DPL PW   ++ +E + P       + + ++ C Q F++D +Y
Sbjct: 28  IRSYSGSDPLRPWLRGMRKMEAALPPATLRAKLPRFLQKCAQEFQDDARY 77


>11_01_0161 -
           1327286-1328592,1328819-1329000,1329279-1329436,
           1329852-1329996,1330083-1330207
          Length = 638

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 500 IXNYQXPDPLEPWFNYIQWVEQSFPKHGHEXHIDKLIKXCLQLFENDNKY 649
           I +Y   DPL PW   ++ +E + P       + + ++ C Q F++D +Y
Sbjct: 28  IRSYSGSDPLRPWLRGMRKMEAALPPATLRAKLPRFLQKCAQEFQDDARY 77


>05_05_0251 + 23616546-23617760
          Length = 404

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 312 TLPTTPQNTDLIVLNFCHYFKC*APDLHFYFTQAQFLSIIIVNRI 178
           TL + P+N D +    CHY +   P +H ++   Q  + +   RI
Sbjct: 135 TLSSPPENEDCLAAAICHYCQETGPRVHRFWRMGQHQAALKRTRI 179


>08_02_1148 -
           24693323-24693877,24694092-24694315,24694519-24694636,
           24694761-24695132,24696998-24697324
          Length = 531

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 260 WQKFSTIKSVFCGVVGSVFPY 322
           W+ F+T  SVFCGV     PY
Sbjct: 108 WENFNTSDSVFCGVFDGHGPY 128


>10_08_0669 +
           19742140-19742189,19742886-19742923,19744260-19744448,
           19746402-19748188
          Length = 687

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 77  RVMSKRASFWCFSLVVANFFHNFKAYDHQKRCCS 178
           R+    ASF     V  N  H     DH+ RCCS
Sbjct: 90  RIGDLSASFLAELRVSTNLLHTPNTADHEVRCCS 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,899,700
Number of Sequences: 37544
Number of extensions: 233140
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)