Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B03
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   2e-14
SB_1789| Best HMM Match : RICH (HMM E-Value=1.6)                       29   2.5  

>SB_26513| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1460

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 35/95 (36%), Positives = 58/95 (61%)
 Frame = +2

Query: 365 DFXKENIQPLRGGRNLVQLSTALQAQSDADAQKQLQIQKEEHETAIXNYQXPDPLEPWFN 544
           +  KEN+QPL+ GR +  L+ AL A S  D Q ++  +K+  ET I  Y+  DPL+ W++
Sbjct: 14  ELSKENVQPLKSGRKVANLTAAL-APSSCDYQSKISREKQLFETEIRTYEGDDPLQVWYS 72

Query: 545 YIQWVEQSFPKHGHEXHIDKLIKXCLQLFENDNKY 649
           YI W+ ++FP    +     L++ C+ LF++ +KY
Sbjct: 73  YIVWICENFPTGCRDQ--STLLERCISLFKDVDKY 105


>SB_1789| Best HMM Match : RICH (HMM E-Value=1.6)
          Length = 254

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 353 KMDIDFXKENIQPLRGGRNLVQLSTALQAQS-DADAQKQLQIQKEEHETAIXNY 511
           K++++  K   + L+   N  +  T  QA+  + DA+++L IQK+E+E AI  +
Sbjct: 68  KIELEEKKRTNELLQRALNQQREFTLRQAKEMEKDAKQRLTIQKQEYEAAIQRH 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,080
Number of Sequences: 59808
Number of extensions: 293893
Number of successful extensions: 695
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)