Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_B01
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 127 HHRSLGQSDAGEENYELGGHDVL 59
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 238 LQQGLEGRLRVRAATAQRLRQESPGQRSETRTARPRR 348
           L+QG++  L +  A     R  SP + +E+    P R
Sbjct: 357 LKQGIQFHLYINTAPCGDARIFSPHEENESVDKHPNR 393


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 264 EPSFQALLKSCASFDLVSELN 202
           EP    +  + ASFD +SE+N
Sbjct: 59  EPLLVGMDLTIASFDAISEVN 79


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 19  CSPVRISSALSLSTAHHGRQVRSSLRLH 102
           CS  R    LS+S    GR +  S R+H
Sbjct: 632 CSVTRGDLPLSISWLKDGRAMGPSERVH 659


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 61  AHHGRQVRSSLRLHRSGPRSDGATRRSRLLQ 153
           A +G+   +   LHR+   S  +  +SRL++
Sbjct: 119 ASNGKIYANHCELHRAACHSGSSLTKSRLMR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,621
Number of Sequences: 438
Number of extensions: 1963
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)