Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_A22
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              218   2e-57
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.80 
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_58040| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               27   7.5  
SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)                  27   9.9  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   27   9.9  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  218 bits (533), Expect = 2e-57
 Identities = 105/121 (86%), Positives = 110/121 (90%)
 Frame = +2

Query: 95  NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFXIRRNEKIA 274
           N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSF IRRNEKI+
Sbjct: 2   NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIS 61

Query: 275 VHCTVRGAKAEEILERGLKVREYELRXDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLX 454
           VHCTVRG KAEEILE+GLKV+EYEL    FSATGNFGFGIQEHIDLGIKYDPSIGIYG+ 
Sbjct: 62  VHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMD 121

Query: 455 F 457
           F
Sbjct: 122 F 122


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 156 VTG*LVPPRCWSNSQDNSLYFP 221
           VT  LVPP  W+ SQD  +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763


>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 155 GDRLTRAAKVLEQLTGQQPVFSKARY 232
           G R TR A   +QLT  + VFSK  Y
Sbjct: 66  GSRRTRTAFTHQQLTALEKVFSKTHY 91


>SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 216 FPRLGIQCGLLXSVVMKRLLSIVQSEELKQKK 311
           F  L +  GL+ +++ KRLLSI  S + ++ K
Sbjct: 196 FSALSLVSGLMAAIIAKRLLSIKTSRDSEKHK 227


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 185 TPWRHESACHRIHQHICSSKAF*YEDSALHF*NYPSEPSSPFYLXST 45
           T  R +S   R  +  CS+K+  +   A HF N+   P  PFY   T
Sbjct: 565 TSRRFQSRPQRCPRRRCSNKSLSFVGRA-HFSNFRVTPKMPFYRSMT 610


>SB_58040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 116 IRKLCLNICVGESGDRLTRAAKVLEQLTGQQPV 214
           IR++CL I   E G    + AK  +Q++  QP+
Sbjct: 6   IRRICLEIEEKEKGQETQKQAKKEDQVSEPQPI 38


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -1

Query: 390 PKPKLPVAEKL-SXRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIXKDRT 235
           P P++P +  L S + S S  +KP+SRI ++L+  ++Q   ++  + + +  T
Sbjct: 149 PLPRIPTSPSLVSLQVSPSYPYKPVSRIPTSLSLVSLQAPPLYPYKPLPRIST 201


>SB_43519| Best HMM Match : Pre-SET (HMM E-Value=0.37)
          Length = 829

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 128 CLNICVGESGDRLTRAAKVLEQLTG 202
           C+++    +GDRLT+A K+   + G
Sbjct: 791 CMHVIADNAGDRLTKAVKISAVVAG 815


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 350 RXDNFSATGNFGFGIQEHIDLGIKYD 427
           +  ++SATG+F   ++EHI  G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,236,437
Number of Sequences: 59808
Number of extensions: 252458
Number of successful extensions: 598
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)