Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_A13
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)                 107   1e-23
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)               89   3e-18
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          49   3e-06
SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  

>SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)
          Length = 238

 Score =  107 bits (256), Expect = 1e-23
 Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
 Frame = +1

Query: 223 MSEKHLQTGDVLPPYSGKLRVFAMRFCPYAERTVLTLNAKNIPYDLXFINLXQKPEW-IF 399
           M + HL  GD  PP   KLR+++MRFCPYAER  L L AK + Y+   INL  KP+W + 
Sbjct: 1   MPQSHLSNGDPRPPPGDKLRLYSMRFCPYAERPRLVLAAKGVDYECININLKNKPDWYLA 60

Query: 400 NFSPKGTVPALEYEPGKALFDSNIINVYLDEKYPXIPLQASDPLRRAQXKILVESFAPAQ 579
             +P+G VP +E   G+ L +S +   YLDE +P  P+  SD   + + ++L++ F    
Sbjct: 61  EPNPRGLVPMIEMPDGRLLPESLLCCEYLDELFPQNPMYPSDAFEKNRQRLLIDRFGKVT 120

Query: 580 SAYY 591
           S++Y
Sbjct: 121 SSFY 124


>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 49/121 (40%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
 Frame = +1

Query: 214 SFNMSEKHLQTGDVLPPY-SGKLRVFAMRFCPYAERTVLTLNAKNIPYDLXFINLXQKPE 390
           S  M   H+  G   P     KLR+++MRFCP+AER  L L AK + Y+   +NL  KPE
Sbjct: 8   SITMPVTHISKGSSRPAKPQNKLRLYSMRFCPFAERPRLVLAAKGLDYECVNVNLKSKPE 67

Query: 391 WIFNFSP--KGTVPALEYEPGKALFDSNIINVYLDEKYPXIPLQASDPLRRAQXKILVES 564
           W F   P  +G VP LE   GK + +S II  +L++ Y  IPL   DP  +++ K+L + 
Sbjct: 68  W-FQTHPDCEGKVPTLETMDGKLIPESVIICEFLEDYYRKIPLYPCDPYAKSRQKLLAQR 126

Query: 565 F 567
           F
Sbjct: 127 F 127


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
 Frame = +1

Query: 298 FCPYAERTVLTLNAKNIPYDLXFINLXQK-PEWIFNFSPKGTVPALEYEPGKALFDSNII 474
           FCP+A+R  + + AK   ++    N   K PEW+   +P G VP + +  G A+++S+I 
Sbjct: 269 FCPFAQRAWIAMLAKKAEFEYIEQNPYNKTPEWL-AINPNGLVPVIVHN-GNAVYESSIC 326

Query: 475 NVYLDEKYPX-IPLQASDPLRRAQXKI 552
             ++DE +   + +   DP +RA  ++
Sbjct: 327 IEFIDEAFSTPVTILPKDPYKRAHGRM 353


>SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 28/74 (37%), Positives = 34/74 (45%)
 Frame = +2

Query: 410 RRVLCQLWNMNLVRHSLTATL*MFILMKSIXRFLCKHQTLCAELXTKFSLRALLQHNQLT 589
           R+VLC LW  N V HS  A      + K + RF C    L  EL  +  L AL Q N ++
Sbjct: 748 RKVLCALWQGNCVSHSPEAL--FSTVWKVVPRFRC----LVEEL--RKVLCALWQGNCVS 799

Query: 590 IQQHSMHKLSSQAW 631
              HS   L S  W
Sbjct: 800 ---HSPEALFSTVW 810


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,267,343
Number of Sequences: 59808
Number of extensions: 305917
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)