Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_A12
(525 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 231 2e-61
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 231 2e-61
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 151 3e-37
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 151 3e-37
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 149 1e-36
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 149 1e-36
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 149 1e-36
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 149 1e-36
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 149 1e-36
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 149 1e-36
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 149 1e-36
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 149 1e-36
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 149 1e-36
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 149 1e-36
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 149 1e-36
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 149 1e-36
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 149 1e-36
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 149 1e-36
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 149 1e-36
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 149 1e-36
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 147 3e-36
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 147 5e-36
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 138 2e-33
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 115 2e-26
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 92 2e-19
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 68 3e-12
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 68 4e-12
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 66 1e-11
At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase fa... 57 8e-09
At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase fa... 57 8e-09
At5g38470.1 68418.m04650 DNA repair protein RAD23, putative simi... 52 2e-07
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 52 3e-07
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 51 4e-07
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 51 5e-07
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 50 1e-06
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 49 2e-06
At1g64470.1 68414.m07309 ubiquitin family protein contains INTER... 49 2e-06
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 48 3e-06
At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquiti... 47 7e-06
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 47 9e-06
At3g06455.1 68416.m00747 splicing factor-related contains weak s... 47 9e-06
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER... 46 2e-05
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 46 2e-05
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 46 2e-05
At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase fa... 45 4e-05
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 45 4e-05
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 45 4e-05
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 45 4e-05
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 45 4e-05
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 44 5e-05
At4g05230.1 68417.m00789 ubiquitin family protein contains INTER... 43 1e-04
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 43 1e-04
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER... 42 2e-04
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER... 41 6e-04
At2g30100.1 68415.m03663 ubiquitin family protein low similarity... 39 0.002
At1g53980.1 68414.m06149 polyubiquitin-related contains similari... 39 0.002
At4g05250.1 68417.m00793 ubiquitin family protein contains INTER... 38 0.005
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER... 36 0.013
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER... 36 0.017
At4g05270.1 68417.m00797 ubiquitin family protein contains INTER... 36 0.017
At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase fa... 35 0.029
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 35 0.039
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 33 0.12
At1g22050.1 68414.m02758 ubiquitin family protein contains INTER... 30 0.83
At1g47680.1 68414.m05297 hypothetical protein 29 2.5
At3g46530.1 68416.m05051 disease resistance protein, RPP13-like ... 27 5.8
At1g51480.1 68414.m05794 disease resistance protein (CC-NBS-LRR ... 27 5.8
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 27 7.7
At4g38340.1 68417.m05420 RWP-RK domain-containing protein simila... 27 7.7
At3g47160.1 68416.m05120 expressed protein similar to MTD2 [Medi... 27 7.7
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 231 bits (565), Expect = 2e-61
Identities = 108/123 (87%), Positives = 114/123 (92%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGGTIEPSLRILAMKYNCXKMICRKCYARLHPRATNCRKTKCGHTNN 400
IQKESTLHLVLRL GG IEPSL +LA KYN KMICRKCYARLHPRA NCRK KCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
Query: 401 LRP 409
LRP
Sbjct: 121 LRP 123
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 231 bits (565), Expect = 2e-61
Identities = 108/123 (87%), Positives = 114/123 (92%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGGTIEPSLRILAMKYNCXKMICRKCYARLHPRATNCRKTKCGHTNN 400
IQKESTLHLVLRL GG IEPSL +LA KYN KMICRKCYARLHPRA NCRK KCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
Query: 401 LRP 409
LRP
Sbjct: 121 LRP 123
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 151 bits (366), Expect = 3e-37
Identities = 72/78 (92%), Positives = 77/78 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGGTI 274
IQKESTLHLVLRL GGT+
Sbjct: 61 IQKESTLHLVLRLRGGTM 78
Score = 96.3 bits (229), Expect = 1e-20
Identities = 44/76 (57%), Positives = 58/76 (76%)
Frame = +2
Query: 47 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 226
I VKTLTGK I +++E +DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T DY I+
Sbjct: 79 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIE 138
Query: 227 KESTLHLVLRLXGGTI 274
S LHLVL L GG +
Sbjct: 139 GGSVLHLVLALRGGLL 154
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 151 bits (366), Expect = 3e-37
Identities = 72/78 (92%), Positives = 77/78 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGGTI 274
IQKESTLHLVLRL GGT+
Sbjct: 61 IQKESTLHLVLRLRGGTM 78
Score = 99.1 bits (236), Expect = 2e-21
Identities = 45/74 (60%), Positives = 58/74 (78%)
Frame = +2
Query: 47 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 226
I VKTLTGK I +++E +DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+
Sbjct: 79 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 138
Query: 227 KESTLHLVLRLXGG 268
S LHLVL L GG
Sbjct: 139 GGSVLHLVLALRGG 152
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 149 bits (361), Expect = 1e-36
Identities = 71/77 (92%), Positives = 76/77 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 221 IQKESTLHLVLRLXGGT 271
IQKESTLHLVLRL GG+
Sbjct: 365 IQKESTLHLVLRLRGGS 381
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 149 bits (361), Expect = 1e-36
Identities = 71/77 (92%), Positives = 76/77 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 221 IQKESTLHLVLRLXGGT 271
IQKESTLHLVLRL GG+
Sbjct: 289 IQKESTLHLVLRLRGGS 305
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 149 bits (361), Expect = 1e-36
Identities = 71/77 (92%), Positives = 76/77 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 221 IQKESTLHLVLRLXGGT 271
IQKESTLHLVLRL GG+
Sbjct: 289 IQKESTLHLVLRLRGGS 305
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/34 (91%), Positives = 34/34 (100%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE 142
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 262
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 144 VFLQTNNVSSLPGNN*KMAALFQTITSRKNPHFTW 248
VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 263 VFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 297
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/34 (91%), Positives = 34/34 (100%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE 142
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 144 VFLQTNNVSSLPGNN*KMAALFQTITSRKNPHFTW 248
VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 415 VFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 449
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/34 (91%), Positives = 34/34 (100%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE 142
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 144 VFLQTNNVSSLPGNN*KMAALFQTITSRKNPHFTW 248
VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 339 VFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 373
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/34 (91%), Positives = 34/34 (100%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE 142
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 144 VFLQTNNVSSLPGNN*KMAALFQTITSRKNPHFTW 248
VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 415 VFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 449
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 66.1 bits (154), Expect = 1e-11
Identities = 31/34 (91%), Positives = 34/34 (100%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKE 142
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +3
Query: 144 VFLQTNNVSSLPGNN*KMAALFQTITSRKNPHFTW 248
VFL+T++VSS ++ +M L+ T TSR++ FTW
Sbjct: 339 VFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTW 373
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 289 IQKESTLHLVLRLRGG 304
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 145 bits (352), Expect = 1e-35
Identities = 70/76 (92%), Positives = 74/76 (97%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 152 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQLEDGRTLADYN 211
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 212 IQKESTLHLVLRLRGG 227
Score = 141 bits (342), Expect = 2e-34
Identities = 70/76 (92%), Positives = 74/76 (97%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D N
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD-N 135
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 136 IQKESTLHLVLRLRGG 151
Score = 100 bits (240), Expect = 5e-22
Identities = 48/53 (90%), Positives = 51/53 (96%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 199
+QIFVKTLTGKTITLEVE+S TI+NVKAKIQDKEGIPPDQQRLIFAGKQLE G
Sbjct: 228 MQIFVKTLTGKTITLEVESSGTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEGG 280
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 149 bits (360), Expect = 1e-36
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 147 bits (357), Expect = 3e-36
Identities = 70/76 (92%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 143 bits (346), Expect = 7e-35
Identities = 69/77 (89%), Positives = 74/77 (96%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGI PDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQHEDGRTLADYN 212
Query: 221 IQKESTLHLVLRLXGGT 271
IQKESTLHLVLRL GG+
Sbjct: 213 IQKESTLHLVLRLRGGS 229
Score = 131 bits (317), Expect = 2e-31
Identities = 61/76 (80%), Positives = 70/76 (92%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIF+KTLTGKT LEVE+SDTI+NVKAKIQD EGIPPDQ RLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFLKTLTGKTKVLEVESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYN 60
Query: 221 IQKESTLHLVLRLXGG 268
+Q++STLHL+LR GG
Sbjct: 61 VQEDSTLHLLLRFRGG 76
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 147 bits (356), Expect = 5e-36
Identities = 69/76 (90%), Positives = 75/76 (98%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEG+PPDQQRLIFAGKQL+DGRTL+DYN
Sbjct: 79 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYN 138
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 139 IQKESTLHLVLRLRGG 154
Score = 140 bits (339), Expect = 5e-34
Identities = 67/76 (88%), Positives = 72/76 (94%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFV+TLT KTI LEVE+SDT +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 155 MQIFVRTLTRKTIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 215 IQKESTLHLVLRLCGG 230
Score = 131 bits (317), Expect = 2e-31
Identities = 66/77 (85%), Positives = 71/77 (92%), Gaps = 1/77 (1%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 217
+QIFV TLTGKTITLEVE+SDTI+NVKAKIQDKE I PDQQRLIFAG+QLEDG TL+DY
Sbjct: 231 MQIFVNTLTGKTITLEVESSDTIDNVKAKIQDKERIQPDQQRLIFAGEQLEDGYYTLADY 290
Query: 218 NIQKESTLHLVLRLXGG 268
NIQKESTLHLVLRL GG
Sbjct: 291 NIQKESTLHLVLRLRGG 307
Score = 116 bits (278), Expect = 1e-26
Identities = 56/76 (73%), Positives = 65/76 (85%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QI KTLT KTIT++V +SDTI NVKAKIQD EGIP DQQRLIF+GK L+DGRTL+DY+
Sbjct: 3 MQIHAKTLTEKTITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLADYS 62
Query: 221 IQKESTLHLVLRLXGG 268
IQK+S LHL LRL GG
Sbjct: 63 IQKDSILHLALRLRGG 78
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 138 bits (334), Expect = 2e-33
Identities = 67/76 (88%), Positives = 73/76 (96%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFV+TLTGKTITLEV++SDTI+NVKAKIQDKEGI P QQRLIFAGKQLEDGRTL+DYN
Sbjct: 79 MQIFVQTLTGKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTLADYN 138
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 139 IQKESTLHLVLRLCGG 154
Score = 130 bits (313), Expect = 7e-31
Identities = 63/76 (82%), Positives = 69/76 (90%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QI+ KTLT KTITL+VE SD+I NVKAKIQ+KEGIP DQQRLIFAGKQLEDG TL+DYN
Sbjct: 3 IQIYAKTLTEKTITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADYN 62
Query: 221 IQKESTLHLVLRLXGG 268
IQKESTLHLVLRL GG
Sbjct: 63 IQKESTLHLVLRLRGG 78
Score = 113 bits (273), Expect = 5e-26
Identities = 57/79 (72%), Positives = 65/79 (82%)
Frame = +2
Query: 23 FIGATQLQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 202
F+ +QIF+KTLTGKTI LEVE+SDTI NVK KIQ KEGI PDQQ LIF G+QLEDG
Sbjct: 546 FLQRGGMQIFIKTLTGKTIILEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGV 605
Query: 203 TLSDYNIQKESTLHLVLRL 259
TL DY+I K+STL+LVLRL
Sbjct: 606 TLGDYDIHKKSTLYLVLRL 624
Score = 105 bits (252), Expect = 2e-23
Identities = 54/73 (73%), Positives = 62/73 (84%), Gaps = 2/73 (2%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLSD 214
+QIFVKTLT K I LEVE+ DTIENVKA +QDKEGI P+ QRLIF GK+L+DG TL+D
Sbjct: 319 MQIFVKTLTRKRINLEVESWDTIENVKAMVQDKEGIQPQPNLQRLIFLGKELKDGCTLAD 378
Query: 215 YNIQKESTLHLVL 253
Y+IQKESTLHLVL
Sbjct: 379 YSIQKESTLHLVL 391
Score = 105 bits (251), Expect = 2e-23
Identities = 51/76 (67%), Positives = 59/76 (77%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+QIFVK GK ITLEV +SDTI++VKAKIQDK G PPDQQ L+F G QL+DGRTL DYN
Sbjct: 393 MQIFVKLFGGKIITLEVLSSDTIKSVKAKIQDKVGSPPDQQILLFRGGQLQDGRTLGDYN 452
Query: 221 IQKESTLHLVLRLXGG 268
I+ ESTLHL + G
Sbjct: 453 IRNESTLHLFFHIRHG 468
Score = 97.9 bits (233), Expect = 4e-21
Identities = 52/82 (63%), Positives = 63/82 (76%), Gaps = 7/82 (8%)
Frame = +2
Query: 41 LQIFVKTLTGK-----TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL--EDG 199
+QIFV T +GK T+TL+VE+SDTIENVKAKIQD+EG+ PD QRLIF G++L ED
Sbjct: 155 MQIFVSTFSGKNFTSDTLTLKVESSDTIENVKAKIQDREGLRPDHQRLIFHGEELFTEDN 214
Query: 200 RTLSDYNIQKESTLHLVLRLXG 265
RTL+DY I+ STL L LRL G
Sbjct: 215 RTLADYGIRNRSTLCLALRLRG 236
Score = 96.3 bits (229), Expect = 1e-20
Identities = 52/81 (64%), Positives = 59/81 (72%), Gaps = 5/81 (6%)
Frame = +2
Query: 41 LQIFVKTL-----TGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 205
+ IFVK L TG+ LEVE+SDTI+NVKAK+QDKE IP D RLIFAGK LE GRT
Sbjct: 238 MYIFVKNLPYNSFTGENFILEVESSDTIDNVKAKLQDKERIPMDLHRLIFAGKPLEGGRT 297
Query: 206 LSDYNIQKESTLHLVLRLXGG 268
L+ YNIQK STL+LV R G
Sbjct: 298 LAHYNIQKGSTLYLVTRFRCG 318
Score = 92.7 bits (220), Expect = 1e-19
Identities = 51/83 (61%), Positives = 58/83 (69%), Gaps = 7/83 (8%)
Frame = +2
Query: 41 LQIFVKTL-------TGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 199
+QIFVKT T KTITLEVE+SDTI+NVK KIQ K GIP D+QRLIF G+ L
Sbjct: 469 MQIFVKTFSFSGETPTCKTITLEVESSDTIDNVKVKIQHKVGIPLDRQRLIFGGRVLVGS 528
Query: 200 RTLSDYNIQKESTLHLVLRLXGG 268
RTL DYNIQK ST+H + GG
Sbjct: 529 RTLLDYNIQKGSTIHQLFLQRGG 551
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 115 bits (276), Expect = 2e-26
Identities = 54/71 (76%), Positives = 61/71 (85%)
Frame = +2
Query: 47 IFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 226
IF+KTLTG+ I LEVE DTIEN+KAKIQDK+GIP DQQRLIF GKQLEDG TL+DYNIQ
Sbjct: 88 IFIKTLTGRRIVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADYNIQ 147
Query: 227 KESTLHLVLRL 259
+S LHL+ RL
Sbjct: 148 NDSILHLIKRL 158
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 91.9 bits (218), Expect = 2e-19
Identities = 41/76 (53%), Positives = 56/76 (73%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
++I VKTLT K I +E+E +DTIE +K +I++KEGIPP QR+++ GKQL D T YN
Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYN 60
Query: 221 IQKESTLHLVLRLXGG 268
+++ S LHLVL L GG
Sbjct: 61 LERGSVLHLVLALRGG 76
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 68.1 bits (159), Expect = 3e-12
Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 13/86 (15%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK------------ 184
+ IF+KTLTG+T T EV+ SDTI +KAK ++KEGIP +QQRLIF G+
Sbjct: 50 MMIFIKTLTGRTNTYEVKGSDTIRELKAKHEEKEGIPVEQQRLIFQGRISIKTVKGKSIN 109
Query: 185 -QLEDGRTLSDYNIQKESTLHLVLRL 259
++ D D I E T LVLRL
Sbjct: 110 LEVADSSDTIDLKINGEPTRQLVLRL 135
Score = 66.1 bits (154), Expect = 1e-11
Identities = 32/70 (45%), Positives = 47/70 (67%)
Frame = +2
Query: 32 ATQLQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 211
A ++IFV T+ KT LEV+ SDTI+ +K+ I D+ G P DQQ L G +L++ T+S
Sbjct: 138 AVLMRIFVSTIKEKTFILEVKGSDTIKKLKSMIHDQGGPPVDQQDLNHLGTKLKNNATIS 197
Query: 212 DYNIQKESTL 241
DYNI+ ++ L
Sbjct: 198 DYNIKPDANL 207
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/26 (53%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +2
Query: 38 QLQIFVKTLTGKTITLEV-EASDTIE 112
Q +I +KT+ GK+I LEV ++SDTI+
Sbjct: 95 QGRISIKTVKGKSINLEVADSSDTID 120
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVE-ASDTIE 112
+ I +KTL GK I LEVE +S+TI+
Sbjct: 1 MHISIKTLEGKRIKLEVEDSSNTID 25
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 67.7 bits (158), Expect = 4e-12
Identities = 30/72 (41%), Positives = 48/72 (66%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
L++ +KTL +T T +V ++T+ K KI + G+P QQRLIF G+ L+D LS+Y+
Sbjct: 24 LELNIKTLDSRTYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSEYH 83
Query: 221 IQKESTLHLVLR 256
++ TLHL++R
Sbjct: 84 LENGHTLHLIVR 95
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 66.1 bits (154), Expect = 1e-11
Identities = 32/77 (41%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +2
Query: 32 ATQLQIFVKTLTG-KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
+T+LQIFV+ ++G KTI + E DT+E + +I+ K IP +QR+I+ GKQL+ +L
Sbjct: 92 STRLQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSL 151
Query: 209 SDYNIQKESTLHLVLRL 259
+ Y+I+++++L LV R+
Sbjct: 152 TYYSIEQDASLQLVARM 168
>At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 56.8 bits (131), Expect = 8e-09
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +2
Query: 59 TLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 235
TL G I + V SD+IE+VK +IQ G Q+L+F G++L + DY + + +
Sbjct: 40 TLPGSVIPMRVLESDSIESVKLRIQSYRGFVVRNQKLVFGGRELARSNSNMRDYGVSEGN 99
Query: 236 TLHLVLRLXGGTIEPSLRILAMKYNCXKMICR 331
LHLVL+L L++L +K C K CR
Sbjct: 100 ILHLVLKL------SDLQVLDVKTTCGKH-CR 124
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +2
Query: 35 TQLQIF-VKTLTGKTITLEVEASDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 205
+ LQ+ VKT GK VE I VK +I K G + PD+Q +++ G++LED
Sbjct: 108 SDLQVLDVKTTCGKHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSL 167
Query: 206 LSDYNIQKESTLHLVLR 256
++D +S LHL++R
Sbjct: 168 INDICRNDDSVLHLLVR 184
>At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 56.8 bits (131), Expect = 8e-09
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +2
Query: 59 TLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 235
TL G I + V SD+IE+VK +IQ G Q+L+F G++L + DY + + +
Sbjct: 40 TLPGSVIPMRVLESDSIESVKLRIQSYRGFVVRNQKLVFGGRELARSNSNMRDYGVSEGN 99
Query: 236 TLHLVLRLXGGTIEPSLRILAMKYNCXKMICR 331
LHLVL+L L++L +K C K CR
Sbjct: 100 ILHLVLKL------SDLQVLDVKTTCGKH-CR 124
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +2
Query: 35 TQLQIF-VKTLTGKTITLEVEASDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 205
+ LQ+ VKT GK VE I VK +I K G + PD+Q +++ G++LED
Sbjct: 108 SDLQVLDVKTTCGKHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSL 167
Query: 206 LSDYNIQKESTLHLVLR 256
++D +S LHL++R
Sbjct: 168 INDICRNDDSVLHLLVR 184
>At5g38470.1 68418.m04650 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform I GI:1914683 from [Daucus carota]
Length = 378
Score = 52.0 bits (119), Expect = 2e-07
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSD 214
++IFVKTL+G +EV+ +D + +VK I+ +G P +Q LI GK L+D TL +
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE 60
Query: 215 YNIQKESTLHLVL 253
N+ + S + ++L
Sbjct: 61 NNVVENSFIVIML 73
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 51.6 bits (118), Expect = 3e-07
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTI-ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 217
LQ FV+ L GK++TL + E +K +I ++ IP QRLI G Q+ DG +S
Sbjct: 9 LQFFVRLLDGKSLTLSFSSPLAYGEQIKQRIFEQTKIPTHLQRLISGGYQISDGSAIS-- 66
Query: 218 NIQKESTLHLVLRLXGG 268
Q ++T++LVL L GG
Sbjct: 67 --QPDATVNLVLSLRGG 81
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 51.2 bits (117), Expect = 4e-07
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +2
Query: 53 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 232
++ G +++ T+E+ K + +P +QQRLI+ G+ L+D +TL Y +Q +
Sbjct: 22 IRCSNGTKFSVKTSLDSTVESFKELVAQSSDVPANQQRLIYKGRILKDDQTLLSYGLQAD 81
Query: 233 STLHLV 250
T+H+V
Sbjct: 82 HTIHMV 87
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 50.8 bits (116), Expect = 5e-07
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +2
Query: 53 VKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 232
V+ G ++ T+E+ K I +P +QQRLI+ G+ L+D +TL Y +Q +
Sbjct: 22 VRCSNGTKFSVTTSLDSTVESFKELIAQNSDVPANQQRLIYKGRILKDDQTLLSYGLQAD 81
Query: 233 STLHLV 250
T+H+V
Sbjct: 82 HTVHMV 87
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+ +++ T TG + ++ ++ +T+ +K KI+ +GIP +Q L GK LED DY
Sbjct: 1 MNVYIDTETGSSFSITIDFGETVLEIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60
Query: 221 IQKESTLHL 247
I ES L L
Sbjct: 61 ILFESRLLL 69
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/71 (36%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY 217
++I +K L T TL VE + + ++K I G+ P++Q RL+F G+ L++ + LSDY
Sbjct: 11 IRIKIKILHSTTHTLSVERTIPVRDLKQDICYYCGVSPERQPRLLFRGRVLKNDQRLSDY 70
Query: 218 NIQKESTLHLV 250
++++ TL+LV
Sbjct: 71 HVEEGHTLYLV 81
>At1g64470.1 68414.m07309 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 213
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +2
Query: 59 TLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 235
+++G T+ + + SD+I VK +IQ G +Q+L+F+G++L + + DY + S
Sbjct: 40 SVSGSTMPMLILESDSIAEVKLRIQTCNGFRVRRQKLVFSGRELARNASRVKDYGVTGGS 99
Query: 236 TLHLVLRL 259
LHLVL+L
Sbjct: 100 VLHLVLKL 107
Score = 35.9 bits (79), Expect = 0.017
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKI-QDKEGIPP-DQQRLIFAGKQLEDGRTLSD 214
L + V T GK V+ + +K +I ++ +G P D Q ++F G++L+D R +
Sbjct: 111 LLVTVITTCGKVFQFHVDRRRNVGYLKKRISKEGKGFPEVDDQEILFKGEKLDDNRIIDG 170
Query: 215 YNIQKESTLHLVLR 256
S +HL+++
Sbjct: 171 ICKDGNSVIHLLVK 184
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/71 (29%), Positives = 45/71 (63%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
++I V T + ITL+V++ +T+ENVKA ++ + +P QQ+L++ G ++ + LS
Sbjct: 1 MRITVMTAGEQIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALG 60
Query: 221 IQKESTLHLVL 253
++ + L +++
Sbjct: 61 VKDDDLLMMMV 71
>At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquitin
SP:P42740 from [Aglaothamnion neglectum]
Length = 79
Score = 47.2 bits (107), Expect = 7e-06
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK---QLEDGRTLS 211
+Q+F+ GK +EVE + TI ++K KI D G+ Q L GK ++ G T+
Sbjct: 1 MQVFIIDEDGKKYCVEVEKTTTIADMKTKIYDATGMENAYQYLEHRGKIVLEVHGGTTMD 60
Query: 212 DYNIQKESTLHLVLRLXGG 268
DY I+ H+ R+ GG
Sbjct: 61 DYKIKACDIFHMSDRMRGG 79
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 46.8 bits (106), Expect = 9e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+ + + T TG + ++ ++ +T+ +K KI+ +GIP +Q L GK LED DY
Sbjct: 1 MNVDIDTETGSSFSITIDFGETVLQIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60
Query: 221 IQKESTL 241
I ES L
Sbjct: 61 ILFESLL 67
>At3g06455.1 68416.m00747 splicing factor-related contains weak
similarity to Swiss-Prot:Q12874 splicing factor 3A
subunit 3 (Spliceosome associated protein 61, SAP 61,
SF3a60) [Homo sapiens]
Length = 366
Score = 46.8 bits (106), Expect = 9e-06
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTI-ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 217
LQ FV+ L GK++TL + E +K +I ++ IP QRLI G Q+ +S
Sbjct: 9 LQFFVRLLDGKSVTLTFSSPIACGEQIKQRIFEQTKIPTHLQRLISGGFQIPGASAIS-- 66
Query: 218 NIQKESTLHLVLRLXGG 268
Q ++T++LVL L GG
Sbjct: 67 --QSDTTMNLVLSLRGG 81
>At4g03370.1 68417.m00459 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 295
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/69 (30%), Positives = 40/69 (57%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+++ V+ +G T ++++ DT+ K KI+ + IP +Q + F GK LED + +++
Sbjct: 1 MKMTVENESGSTFSIDIGLQDTVLTFKRKIEMTQRIPVSRQTIFFQGKLLEDHLDIFEWD 60
Query: 221 IQKESTLHL 247
I + LHL
Sbjct: 61 ILQNPLLHL 69
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 211
++IFVKTL G +EV+ D++ +VK I+ +G P +Q LI GK L+D T+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 212 DYNIQKESTLHLVL 253
+ + + S + +++
Sbjct: 61 ENKVAENSFIVIMM 74
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 211
++IFVKTL G +EV+ D++ +VK I+ +G P +Q LI GK L+D T+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 212 DYNIQKESTLHLVL 253
+ + + S + +++
Sbjct: 61 ENKVAENSFIVIMM 74
>At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain, Pfam profile
PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 574
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 59 TLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKES 235
T+ G I V SD+I +VK +IQ +G +Q+L++ G+++ + + DY +
Sbjct: 38 TIAGSVIPKRVMESDSIASVKLRIQSIKGFFVKKQKLLYDGREVSRNDSQIRDYGLADGK 97
Query: 236 TLHLVLRL 259
LHLV+RL
Sbjct: 98 LLHLVIRL 105
Score = 42.7 bits (96), Expect = 1e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +2
Query: 47 IFVKTLTGKTITLEVEASDTIENVKAKIQDKE---GIPPDQQRLIFAGKQLEDGRTLSDY 217
I V+T+ GK L VE S + VK +I KE GIP D + L G++L+D R ++D
Sbjct: 111 ISVRTVDGKEFELVVERSRNVGYVKQQIASKEKELGIPRDHE-LTLDGEELDDQRLITDL 169
Query: 218 NIQKESTLHLVL 253
++ +HL++
Sbjct: 170 CQNGDNVIHLLI 181
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 211
+++ VKTL G + V SDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 212 DYNIQKESTLHLVL 253
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 211
+++ VKTL G + V SDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 212 DYNIQKESTLHLVL 253
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 211
+++ VKTL G + V SDTI VK I+D +G P QQ LI GK L+D +L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 212 DYNIQKESTLHLVL 253
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 211
+++ VKTL G + V +DTI VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 212 DYNIQKESTLHLVL 253
+ + +E L ++L
Sbjct: 61 ENKVTEEGFLVVML 74
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY 217
++I VK+L GK L V +++ +++AK K + ++ + GK+L+D ++L+
Sbjct: 661 MKIIVKSLGGKGSKLHVGIEESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSLAAQ 720
Query: 218 NIQKESTLHLV 250
N+Q S +HL+
Sbjct: 721 NVQPNSLVHLI 731
>At4g05230.1 68417.m00789 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 206
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/69 (30%), Positives = 36/69 (52%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+ +F +T +G T +E+ DT+ +K KI+ + IP +Q L+F G L+D +
Sbjct: 1 MDVFFETRSGSTFEIELGYWDTVLEIKQKIEKYQRIPVSKQTLLFQGNVLQDHLDIEQCV 60
Query: 221 IQKESTLHL 247
I S + L
Sbjct: 61 ILNHSRIQL 69
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +2
Query: 8 FPSTFFIGATQLQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQ-RLIFAGK 184
F S I ++I + L GK L V +++ ++KAK K + ++ + GK
Sbjct: 489 FHSAPAIKLQTMKIKLSNLGGKGSLLTVGREESVSSLKAKASRKLDFKETEAVKMFYMGK 548
Query: 185 QLEDGRTLSDYNIQKESTLHLV 250
+LED ++L++ N+Q S +HL+
Sbjct: 549 ELEDEKSLAEQNVQPNSLVHLL 570
>At4g02950.1 68417.m00402 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = +2
Query: 35 TQLQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 214
T + + ++ +G + T++V DT+ +K KI+ +G P +Q LIF K L+D +
Sbjct: 34 TMISVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFG 93
Query: 215 YNIQKESTLHL 247
I+ S + L
Sbjct: 94 CQIRHNSRILL 104
>At4g03360.1 68417.m00458 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 284
Score = 40.7 bits (91), Expect = 6e-04
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+++ ++ +G + T++V DT+ +K KI+ +G P +Q LIF K L+D +
Sbjct: 2 IKVIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQ 61
Query: 221 IQKESTLHL 247
I+ S + L
Sbjct: 62 IRHNSRILL 70
>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
(Ras-binding protein Sur-8) {Homo sapiens}; contains
Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
repeat, PF00560: Leucine Rich Repeat
Length = 897
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +2
Query: 68 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 247
GK+I L V T++++K+++Q + P Q+LIF GK L + TL ++ + L L
Sbjct: 544 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLML 603
Query: 248 V 250
+
Sbjct: 604 M 604
>At1g53980.1 68414.m06149 polyubiquitin-related contains similarity
to polyubiquitin GI:166336 from (Aglaothamnion
neglectum)
Length = 91
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPP 154
+ IFV TL GKT LEV+ S+ I+ VK I D+ +PP
Sbjct: 49 MSIFVSTLKGKTFNLEVKGSEIIQQVKNMIHDQ--VPP 84
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVE-ASDTIE 112
++I +KT GKTI LE+E +S+TI+
Sbjct: 1 MKILIKTEKGKTINLELEDSSETID 25
>At4g05250.1 68417.m00793 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 196
+ +F +T +G +E+ DT+ +K KI+ + IP +Q LIF G L+D
Sbjct: 1 MDVFFETQSGDKFEIELGYWDTMLEIKEKIEKYQCIPVSKQTLIFQGVVLQD 52
>At5g14360.1 68418.m01678 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 163
Score = 36.3 bits (80), Expect = 0.013
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 83 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 196
L +EA+ T +K + G+ P QQRL+F GK+ ED
Sbjct: 83 LSIEATSTFGELKMVLSLLTGLEPKQQRLVFKGKERED 120
>At4g05310.1 68417.m00809 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 415
Score = 35.9 bits (79), Expect = 0.017
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 181
++ V+ L G + +EVE +DT+ VK KI+ + +P +Q LI G
Sbjct: 1 MKFVVEILGGSSFEIEVERTDTLLVVKQKIEKSQRVPVSKQTLIVDG 47
>At4g05270.1 68417.m00797 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 129
Score = 35.9 bits (79), Expect = 0.017
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 181
++ V+ L G + LEV+ DT+ VK KI+ + IP +Q LI G
Sbjct: 1 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDG 47
>At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase
family protein similar to phosphatidylinositol 4-kinase
type-II beta [Homo sapiens] GI:20159767; contains Pfam
profile PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 630
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 44 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 205
++FV+T TG + LE++ SD VK K+Q P ++ L F L++ T
Sbjct: 42 RVFVQTETGCVLGLELDRSDNAHTVKRKLQVALNFPIEESSLTFGDLVLKNDLT 95
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 34.7 bits (76), Expect = 0.039
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 41 LQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 196
+ + V T++ + + ++A+ T +K I GI +QRL+F GK+ ED
Sbjct: 79 ISLRVSTVSQLSYEISIDANSTFGELKMMIAIVSGIEAKEQRLLFRGKERED 130
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 33.1 bits (72), Expect = 0.12
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 83 LEVEASD-TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG----RTLSDYNIQKESTL 241
LEVE + T+ ++ ++ + G+ P+ +LIFAGK L+D TLS I++ S +
Sbjct: 14 LEVELENWTLNMLRDEVAKRSGLDPESIKLIFAGKILKDDGDATLTLSQLGIKENSKI 71
>At1g22050.1 68414.m02758 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 119
Score = 30.3 bits (65), Expect = 0.83
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 13/67 (19%)
Frame = +2
Query: 98 SDTIENVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLSDYNIQ------KEST 238
S T+ ++K K+ +DKE P + +LI AGK LE+ RTL++ + T
Sbjct: 28 SMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAESRLPVCELPGMIIT 87
Query: 239 LHLVLRL 259
+H+VLRL
Sbjct: 88 MHIVLRL 94
>At1g47680.1 68414.m05297 hypothetical protein
Length = 104
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 92 EASDTIENVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 247
E D +E++ K ++ G + +L +G+Q+ R L DY +Q E+T L
Sbjct: 31 EEDDGMEDITKKYHNEVGEVVQGVPQLRRSGRQISQSRYLEDYVMQSETTYGL 83
>At3g46530.1 68416.m05051 disease resistance protein, RPP13-like
(CC-NBS class), putative domain signature CC-NBS exists,
suggestive of a disease resistance protein. Closest
homolog in Col-0 to RPP13.
Length = 835
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 175 KDETLLVWRNTFLVLDFSFDIFDSVGSFHLQ 83
+DE W LVLDF++D+ D + ++HL+
Sbjct: 54 EDEVSKEWSK--LVLDFAYDVEDVLDTYHLK 82
>At1g51480.1 68414.m05794 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 941
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 175 CRETIRRWPHSFRL*HPERIHTSPGFE 255
C+ETI+ W H+ + + H PG E
Sbjct: 447 CKETIQEWHHAINVLNSPAGHKFPGME 473
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 62 LTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 199
+TG T E DTI K ++ G P + ++F+G DG
Sbjct: 323 VTGMRTTKEARIGDTIYRTKTTVEPLPGFKP-VRHMVFSGVYPADG 367
>At4g38340.1 68417.m05420 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 767
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = +2
Query: 68 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 247
GK ++ ++ ++EN K K + ++ I D R FAG + + + +TL
Sbjct: 473 GKQVSFSFSSASSLENRKRKTKAEKDITLDTLRQHFAGSLKDAAKNIG----VCPTTLKR 528
Query: 248 VLRLXGGTIEPSLRILAMKYNCXKM 322
+ R G + PS +I + ++ K+
Sbjct: 529 ICRQNGISRWPSRKIKKVGHSLRKL 553
>At3g47160.1 68416.m05120 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812; supporting cDNA
gi|25083983|gb|BT002136.1|
Length = 245
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 308 NCXKMICRKCYARLHPRATNC 370
NC +C KCY H R+ +C
Sbjct: 161 NCTHSLCIKCYRDWHGRSESC 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,099,319
Number of Sequences: 28952
Number of extensions: 229165
Number of successful extensions: 792
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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