Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_A05
(536 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a ... 161 2e-39
BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. 161 2e-39
BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a ... 161 2e-39
BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a ... 161 2e-39
AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting ... 161 2e-39
X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ... 158 1e-38
AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a ... 116 7e-26
X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a pr... 38 0.017
X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein. 31 3.4
AK126039-1|BAC86408.1| 214|Homo sapiens protein ( Homo sapiens ... 30 6.0
AF043976-1|AAD23734.1| 262|Homo sapiens CLCA homolog protein. 29 7.9
>BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 161 bits (390), Expect = 2e-39
Identities = 75/111 (67%), Positives = 86/111 (77%)
Frame = +1
Query: 175 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGG 354
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+A T PGG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 355 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 63 ---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein.
Length = 110
Score = 161 bits (390), Expect = 2e-39
Identities = 75/111 (67%), Positives = 86/111 (77%)
Frame = +1
Query: 175 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGG 354
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+A T PGG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 355 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 63 ---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 161 bits (390), Expect = 2e-39
Identities = 75/111 (67%), Positives = 86/111 (77%)
Frame = +1
Query: 175 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGG 354
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+A T PGG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 355 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 63 ---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 161 bits (390), Expect = 2e-39
Identities = 75/111 (67%), Positives = 86/111 (77%)
Frame = +1
Query: 175 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGG 354
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+A T PGG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 355 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 63 ---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting
protein 33 protein.
Length = 110
Score = 161 bits (390), Expect = 2e-39
Identities = 75/111 (67%), Positives = 86/111 (77%)
Frame = +1
Query: 175 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGG 354
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+A T PGG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 355 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 63 ---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for
ribosomal protein L35a. ).
Length = 110
Score = 158 bits (383), Expect = 1e-38
Identities = 74/111 (66%), Positives = 85/111 (76%)
Frame = +1
Query: 175 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGG 354
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+A T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 355 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
GK K R IWGKVTR HGNSG V AKF+SNLPA+A+GH IRVMLYPSRI
Sbjct: 62 --GKPNKTRVIWGKVTRAHGNSGMVLAKFRSNLPAKAIGHRIRVMLYPSRI 110
>AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a
pseudogene 3 protein.
Length = 96
Score = 116 bits (278), Expect = 7e-26
Identities = 56/97 (57%), Positives = 67/97 (69%)
Frame = +1
Query: 175 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGG 354
GRL++K+ F GYKR L+NQ E+TALLK+EG +++ FY GK C VY+A T IPG
Sbjct: 2 GRLWSKSFFAGYKRSLQNQREHTALLKIEGGYAQDETEFYLGKRCACVYKAKSNTMIPG- 60
Query: 355 PRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQA 465
K K R IWGKVTR H NSG V AKF SNLPA+A
Sbjct: 61 --SKPNKSRVIWGKVTRAHRNSGMVAAKFHSNLPAKA 95
>X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a
protein.
Length = 21
Score = 38.3 bits (85), Expect = 0.017
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +1
Query: 175 GRLYAKAVFTGYKRGLRNQ 231
GRL++KA+F GYKRGLRNQ
Sbjct: 3 GRLWSKAIFAGYKRGLRNQ 21
>X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.
Length = 1618
Score = 30.7 bits (66), Expect = 3.4
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 402 GHLAPDSTQLGFF-ATGTSGNWCPLXSSVH 316
G PDST LGF+ + TS W PL S H
Sbjct: 1291 GETLPDSTPLGFYLRSPTSPRWTPLESRGH 1320
>AK126039-1|BAC86408.1| 214|Homo sapiens protein ( Homo sapiens
cDNA FLJ44051 fis, clone TESTI4033433. ).
Length = 214
Score = 29.9 bits (64), Expect = 6.0
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -2
Query: 427 HCQSCHVGGSPCPR*HAAWFFCHGDLRELVSSX*LCTHRRNACQ 296
HC C GG P P+ H AW + S HRR+ CQ
Sbjct: 136 HCSHCP-GGQPGPQLHRAWTVWSWAVPSSASRACGDGHRRSTCQ 178
>AF043976-1|AAD23734.1| 262|Homo sapiens CLCA homolog protein.
Length = 262
Score = 29.5 bits (63), Expect = 7.9
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 176 AGCTQRPYSQD--ISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELXRGHQFP 349
A C RP+ +D + A T P S+ ++ V MQ+ L S+ CTE + P
Sbjct: 203 ASCIARPFRRDSQTGLYEAKCTFIPKRSQTAKESIVFMQN--LDSVTEFCTEKTHNKEAP 260
Query: 350 EV 355
+
Sbjct: 261 NL 262
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,321,875
Number of Sequences: 237096
Number of extensions: 1782869
Number of successful extensions: 12724
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12717
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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