Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_A05
(536 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si... 109 1e-24
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si... 109 1e-24
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id... 107 4e-24
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri... 107 5e-24
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ... 29 2.6
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot... 27 6.0
At5g51195.1 68418.m06348 hypothetical protein 27 7.9
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 27 7.9
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 27 7.9
>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
similar to ribosomal protein L33B GB:NP_014877 from
[Saccharomyces cerevisiae]
Length = 112
Score = 109 bits (262), Expect = 1e-24
Identities = 53/110 (48%), Positives = 70/110 (63%)
Frame = +1
Query: 178 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGGP 357
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+A +T G
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA--KTKKNG-- 66
Query: 358 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
+ R IWGKVTRPHGNSG VRAKF SNLP ++MG +RV +YPS I
Sbjct: 67 ----SHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
similar to ribosomal protein L35a GI:57118 from [Rattus
norvegicus]
Length = 112
Score = 109 bits (262), Expect = 1e-24
Identities = 54/110 (49%), Positives = 69/110 (62%)
Frame = +1
Query: 178 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGGP 357
RLY + GYKR NQ+ NT+L++VEG + +Y GK Y+Y+A +T G
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA--KTKKNG-- 66
Query: 358 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
+ R IWGKVTRPHGNSG VRAKF SNLP ++MG +RV +YPS I
Sbjct: 67 ----SHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
identical to GB:CAB81600 from [Arabidopsis thaliana]
Length = 111
Score = 107 bits (258), Expect = 4e-24
Identities = 52/110 (47%), Positives = 70/110 (63%)
Frame = +1
Query: 178 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGGP 357
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+A +T G
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKA--KTKKNG-- 65
Query: 358 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
+ R IWGKVTRPHGNSG VR+KF SNLP ++MG +RV +YPS I
Sbjct: 66 ----SHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
PIR:S44069
Length = 111
Score = 107 bits (257), Expect = 5e-24
Identities = 52/110 (47%), Positives = 70/110 (63%)
Frame = +1
Query: 178 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGGP 357
RLY + GYKR NQ+ NT+L+++EG + + +Y GK Y+Y+A +T G
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKA--KTKKNG-- 65
Query: 358 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHXIRVMLYPSRI 507
+ R IWGKVTRPHGNSG VR+KF SNLP ++MG +RV +YPS I
Sbjct: 66 ----SHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
PF04424: Protein of unknown function (DUF544)
Length = 682
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = +1
Query: 259 EGAKDRNDAVFYAGKHCVYVYRAXKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAK 438
EG K+R VF+ H +++ + +G + +W K+ +G++ + A
Sbjct: 508 EGLKERELCVFFRNNHFCTMFKYEGELYLLATDQGYLNQPDLVWEKLNEVNGDTAFMTAT 567
Query: 439 FK 444
FK
Sbjct: 568 FK 569
>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
similar to early nodulin ENOD8 [Medicago sativa]
GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
carota] GI:1911765, lanatoside 15'-O-acetylesterase
[Digitalis lanata] GI:3688284; contains InterPro Entry
IPR001087 Lipolytic enzyme, G-D-S-L family
Length = 379
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 432 SDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 337
SDT ++ G L S ++ FF + TSG +C
Sbjct: 45 SDTGELSSGLGFLPQPSYEITFFRSPTSGRFC 76
>At5g51195.1 68418.m06348 hypothetical protein
Length = 267
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 453 EVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 337
E++ E+ S+ W D T FFA+ SG WC
Sbjct: 209 EIQAEMESEDVAATFWID----DETHDDFFASSKSGWWC 243
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 489 HHSYXVS-HSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLXSS 322
H S +S +LGRE L +G D G + P+ST+L + A+ ++ C +S
Sbjct: 304 HQSELLSIDALGRERVLSVGRDRTMQLYKVGIVVPESTRLIYRASESNFECCCFVNS 360
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 314 MCTELXRGHQFPEVPVAKKPSCVLSGAR*P-AHMATLAVSEPSSSLTSLPRL 466
+CT++ R PE A P+ + + P A L VSEP+ ++P+L
Sbjct: 387 VCTDMFRFVDIPEANAAIPPANDVIEEKVPETEGAALRVSEPNHGFDNVPKL 438
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,766,288
Number of Sequences: 28952
Number of extensions: 215623
Number of successful extensions: 517
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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