Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P22
         (1319 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O65530 Cluster: Putative uncharacterized protein F4D11....    34   7.2  

>UniRef50_O65530 Cluster: Putative uncharacterized protein F4D11.90;
           n=5; cellular organisms|Rep: Putative uncharacterized
           protein F4D11.90 - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 731

 Score = 34.3 bits (75), Expect = 7.2
 Identities = 25/85 (29%), Positives = 26/85 (30%)
 Frame = -3

Query: 498 SPTTXX*APAAXXPSX*XXRDXSXAXXPXLXXQSXSLSMGXXCPXLLXXATXVNXXXPLX 319
           SP      PA   P      D S    P L      LS     P     +       PL 
Sbjct: 8   SPAPATSPPAMSLPPADSVPDTSSPPAPPLSPLPPPLSSPPPLPSPPPLSAPTASPPPLP 67

Query: 318 XXSPXXPPTXSPPXPXXRPPHXXPL 244
             SP  PP  SPP P    P   PL
Sbjct: 68  VESPPSPPIESPPPPLLESPPPPPL 92


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,865,668
Number of Sequences: 1657284
Number of extensions: 4043010
Number of successful extensions: 12018
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10214
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 136058751024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)