Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P21
         (1167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    39   0.001
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    39   0.002
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    30   0.54 
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   8.7  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   8.7  

>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
 Frame = +2

Query: 299 KNIVVSGGVACNDFIFKSM-------QFVAGKSGYSCYRPPPKVCTDNGIMIAWNGVEKL 457
           K +V SGGVA N+ + K +       QF    +      P P +C+DN  MI +  ++  
Sbjct: 318 KYLVCSGGVARNELLKKMLNDTLMVLQFEHQPTDIKLVYPSPDICSDNAAMIGYTAIQMF 377

Query: 458 KKSYQIQYDL 487
           K  Y   +D+
Sbjct: 378 KAGYTSSFDV 387


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +2

Query: 272 EKNLINPNNKNIVVSGGVACNDFIFKSMQFVAGKSGYSCYRPPPKVCTDNGIMIAWNGV 448
           E+ + +    ++++ GGV CN+ + + M  ++   G   +    + C DNGIMIA  G+
Sbjct: 257 ERAMAHIRADSVLIVGGVGCNERLQQMMAEMSSDRGADVFSTDERFCIDNGIMIAQAGL 315


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 419 NGIMIAWNGVEKLKKSYQIQYDLPLSEI 502
           NGI++A++ +  L+KS ++ YD P S I
Sbjct: 45  NGIVLAYDNIRFLEKSAKVMYDSPFSFI 72


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 324 TPPETTIFLLLGLIKFFSSQKIIALXXLCPKCS 226
           TPP  +IF+ +G + F ++Q    L    P C+
Sbjct: 301 TPPSGSIFVRVGQVFFLAAQNKFNLEKTKPSCT 333


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 460 LKF-FYTIPCYHYPIISTNFRWRSITAITRFTSNKLH*FKYKIITSN 323
           LK+  + I  Y+Y +I  +  +  I  I  F  N LH F Y+I+ S+
Sbjct: 60  LKYELFIIYYYYYLLICLSPHFFPIKRIRPFHENPLHSFVYRIMISS 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,325
Number of Sequences: 5004
Number of extensions: 50644
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)