Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P21
         (1167 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical pr...    50   2e-06
AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical...    37   0.031

>Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical
           protein C01G10.10 protein.
          Length = 421

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 28/85 (32%), Positives = 44/85 (51%)
 Frame = +2

Query: 194 DLCASFQIALAEHLGHXLXXAIIFCEEKNLINPNNKNIVVSGGVACNDFIFKSMQFVAGK 373
           D CAS Q  +A H+   L    IF E  +      K +V+ GGVA N +IF ++  ++  
Sbjct: 266 DFCASLQNTVARHISSKLH---IFFESLSEQEKLPKQLVIGGGVAANQYIFGAISKLSAA 322

Query: 374 SGYSCYRPPPKVCTDNGIMIAWNGV 448
              +  +    +CTDN  MIA++G+
Sbjct: 323 HNVTTIKVLLSLCTDNAEMIAYSGL 347


>AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.1 protein.
          Length = 337

 Score = 36.7 bits (81), Expect = 0.031
 Identities = 20/77 (25%), Positives = 40/77 (51%)
 Frame = +2

Query: 257 IIFCEEKNLINPNNKNIVVSGGVACNDFIFKSMQFVAGKSGYSCYRPPPKVCTDNGIMIA 436
           +I   E+ + + ++K +++ GGV CN  + +    +  + G   +    + C DNG MIA
Sbjct: 243 LIEITERAMAHTSSKELLIVGGVGCNLRLQEMASAMCAERGAHLFATDERFCIDNGAMIA 302

Query: 437 WNGVEKLKKSYQIQYDL 487
             G  +L  +  +++DL
Sbjct: 303 RAG--ELMLASGMRFDL 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,710,211
Number of Sequences: 27780
Number of extensions: 330326
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3182509690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)