Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P18
         (1244 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.89 
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    25   1.6  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.4 bits (53), Expect = 0.89
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = +2

Query: 635 PQXGXXXGVXPXXPPPXXXFKKX-PPXXGGGXPXGXXKXPGVPPRXXPP 778
           PQ G      P    P    ++  PP   GG P G     G+P    PP
Sbjct: 37  PQGGGAVQPDPGSCDPSVGLRQGIPPHHYGGPPSGGQPPQGMPYPRFPP 85


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D protein.
          Length = 255

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 1170 PXXXXPPPPXKXXXGXXPQKNP 1105
            P    PPPP +      PQ NP
Sbjct: 210  PSTIPPPPPEEDDDSNIPQNNP 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,601
Number of Sequences: 336
Number of extensions: 4740
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36480155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)