Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P18
         (1244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.11 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +1

Query: 676 PPPGXXQKXXPPXGGGXPPXGXXXSRGSPPXXPPXGPPLXPP 801
           P P   Q    P  G  P      S+G PP  PP  PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPP----NPSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = -2

Query: 1171 PPXXGPPPPPKXXXGXPPPKKPXXXXXXP 1085
            PP     PPP    G PP + P      P
Sbjct: 39   PPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = +2

Query: 704 PPXXGGGXPXGXXKXPGVPPRXXPPXAPPXPPXG 805
           P     G      + P  P R  PP     PP G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPG 49


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -2

Query: 1171 PPXXGPPPPPKXXXGXPPPK 1112
            PP   PPPPP    G    K
Sbjct: 338  PPKPAPPPPPPSSSGPDSAK 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,297
Number of Sequences: 438
Number of extensions: 12187
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42502302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)