Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_P17
(1146 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase w... 33 1.5
X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2 pr... 33 1.5
BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein. 32 4.5
BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein. 32 4.5
AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein. 32 4.5
U09280-1|AAA21147.1| 72|Homo sapiens type XIX collagen protein. 31 6.0
U09279-1|AAA21146.1| 405|Homo sapiens type XIX collagen protein. 31 6.0
D38163-1|BAA07368.1| 1142|Homo sapiens a1(XIX) collagen chain pr... 31 6.0
BC113364-1|AAI13365.1| 1142|Homo sapiens collagen, type XIX, alp... 31 6.0
BC113362-1|AAI13363.1| 1142|Homo sapiens collagen, type XIX, alp... 31 6.0
AL359539-1|CAI16492.1| 1142|Homo sapiens collagen type XIX alpha... 31 6.0
AL160262-5|CAI42322.1| 1142|Homo sapiens collagen type XIX alpha... 31 6.0
AL160262-1|CAI42319.2| 764|Homo sapiens collagen type XIX alpha... 31 6.0
AL136445-2|CAI42716.1| 1142|Homo sapiens collagen type XIX alpha... 31 6.0
AL136445-1|CAC12699.3| 764|Homo sapiens collagen type XIX alpha... 31 6.0
AL133388-3|CAI42497.1| 1142|Homo sapiens collagen type XIX alpha... 31 6.0
AL133388-1|CAI42496.2| 764|Homo sapiens collagen type XIX alpha... 31 6.0
AL118519-1|CAB99331.2| 1142|Homo sapiens collagen type XIX alpha... 31 6.0
AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein. 31 6.0
AF115509-1|AAD41257.1| 721|Homo sapiens LRR FLI-I interacting p... 31 6.0
AB004629-1|BAA23309.1| 1143|Homo sapiens Type XIX collagen a1 ch... 31 6.0
>Z48615-1|CAA88531.1| 953|Homo sapiens serine/threonine kinase with
SH3 domain, leucine zipper domain and proline rich
protein.
Length = 953
Score = 33.5 bits (73), Expect = 1.5
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = -1
Query: 672 ERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 493
ER G+ GS+Q S+ G++P + GFA+ + +F +A GG + +P +
Sbjct: 573 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 630
Query: 492 RPFYGSWP 469
P Y S P
Sbjct: 631 TPSYLSVP 638
>X90846-1|CAA62351.1| 954|Homo sapiens mixed lineage kinase 2
protein.
Length = 954
Score = 33.5 bits (73), Expect = 1.5
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = -1
Query: 672 ERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 493
ER G+ GS+Q S+ G++P + GFA+ + +F +A GG + +P +
Sbjct: 574 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 631
Query: 492 RPFYGSWP 469
P Y S P
Sbjct: 632 TPSYLSVP 639
>BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein.
Length = 299
Score = 31.9 bits (69), Expect = 4.5
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 674 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 546
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein.
Length = 293
Score = 31.9 bits (69), Expect = 4.5
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 674 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 546
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein.
Length = 482
Score = 31.9 bits (69), Expect = 4.5
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 674 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 546
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>U09280-1|AAA21147.1| 72|Homo sapiens type XIX collagen protein.
Length = 72
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 43 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 70
>U09279-1|AAA21146.1| 405|Homo sapiens type XIX collagen protein.
Length = 405
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 89 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 116
>D38163-1|BAA07368.1| 1142|Homo sapiens a1(XIX) collagen chain
precursor protein.
Length = 1142
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 826 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 853
>BC113364-1|AAI13365.1| 1142|Homo sapiens collagen, type XIX, alpha
1 protein.
Length = 1142
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 826 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 853
>BC113362-1|AAI13363.1| 1142|Homo sapiens collagen, type XIX, alpha
1 protein.
Length = 1142
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 826 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 853
>AL359539-1|CAI16492.1| 1142|Homo sapiens collagen type XIX alpha 1
protein.
Length = 1142
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 826 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 853
>AL160262-5|CAI42322.1| 1142|Homo sapiens collagen type XIX alpha 1
protein.
Length = 1142
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 826 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 853
>AL160262-1|CAI42319.2| 764|Homo sapiens collagen type XIX alpha 1
protein.
Length = 764
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 448 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 475
>AL136445-2|CAI42716.1| 1142|Homo sapiens collagen type XIX alpha 1
protein.
Length = 1142
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 826 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 853
>AL136445-1|CAC12699.3| 764|Homo sapiens collagen type XIX alpha 1
protein.
Length = 764
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 448 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 475
>AL133388-3|CAI42497.1| 1142|Homo sapiens collagen type XIX alpha 1
protein.
Length = 1142
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 826 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 853
>AL133388-1|CAI42496.2| 764|Homo sapiens collagen type XIX alpha 1
protein.
Length = 764
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 448 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 475
>AL118519-1|CAB99331.2| 1142|Homo sapiens collagen type XIX alpha 1
protein.
Length = 1142
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 826 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 853
>AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein.
Length = 326
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 618 LVRSPVPTLPLTGYLSAFLPSGSVALSHS 704
+ R PV T+P+ L AF GSV LSHS
Sbjct: 161 IFRGPVATIPIVLLLKAFPYCGSVVLSHS 189
>AF115509-1|AAD41257.1| 721|Homo sapiens LRR FLI-I interacting
protein 2 protein.
Length = 721
Score = 31.5 bits (68), Expect = 6.0
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 894 YIPRSANPVNQWLLPVAISRVLPGWTQDDSYRIRRSGRAERGVR 763
Y PR+ + + + ++ +R PG+T DD+ I S RA RG R
Sbjct: 215 YGPRTPSECSYYSSRISSARSSPGFTNDDTASIVSSDRASRGRR 258
>AB004629-1|BAA23309.1| 1143|Homo sapiens Type XIX collagen a1 chain
protein.
Length = 1143
Score = 31.5 bits (68), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -1
Query: 102 SSMYLIMSGSN*PSXKGDPRPRGXKGFP 19
SS+Y I G N PS G P P G KG P
Sbjct: 827 SSLYKIKGGVNVPSYPGPPGPPGPKGDP 854
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,039,339
Number of Sequences: 237096
Number of extensions: 3483621
Number of successful extensions: 14522
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14518
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 16032164540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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