Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P16
         (1290 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       32   1.1  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -1

Query: 648 PXQXXGAXPPTPAXGPXPPXRPXAGXXPXXXXXGG 544
           P    G  PP PA GP PP  P     P     GG
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372



 Score = 29.1 bits (62), Expect = 8.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -1

Query: 660 GXXXPXQXXGAXPPTPAXGPXPPXRPXAG 574
           G   P    G  PP P  GP PP  P  G
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPPPPG 371



 Score = 26.2 bits (55), Expect(2) = 8.5
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -1

Query: 648 PXQXXGAXPPTPAXGPXPPXRPXAGXXPXXXXXG 547
           P     A PP P  GP PP  P  G  P     G
Sbjct: 329 PPPPKAAPPPPPPKGPPPPP-PAKGPPPPPPPKG 361



 Score = 21.0 bits (42), Expect(2) = 8.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 426 PXPNPXPPXGG 394
           P P P PP GG
Sbjct: 362 PSPPPPPPPGG 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,646
Number of Sequences: 37544
Number of extensions: 145664
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4015679940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)