Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_P15
(1197 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 50 5e-07
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.002
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.004
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 36 0.011
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 35 0.019
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 34 0.045
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 34 0.045
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.10
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.18
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.18
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.24
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.24
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.42
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 30 0.73
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 29 0.97
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 1.3
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 29 1.7
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 29 1.7
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 29 1.7
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 28 3.0
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 28 3.0
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 28 3.0
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 3.9
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 3.9
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 3.9
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 5.2
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 5.2
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 5.2
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 27 5.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 5.2
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 27 6.8
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 26 9.0
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 26 9.0
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 50.4 bits (115), Expect = 5e-07
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +2
Query: 716 PNTTNLYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRKD 895
P + +LY+G L+P +TE L E+F GP+ASI++ D R V F + +D
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVC---RDAVTRRSLGYAYVNFHNMED 133
Query: 896 GERXLRXIN 922
GE+ L +N
Sbjct: 134 GEKALDELN 142
Score = 43.2 bits (97), Expect = 7e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Frame = +2
Query: 719 NTTNLYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRKDG 898
N TN+Y+ NL+ +ITE + ++FG++G + S+ ++ + +K RG G V + + +
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLV--KDQNDKPRG--FGFVNYANHECA 314
Query: 899 ERXLRXINGXE 931
++ + +N E
Sbjct: 315 QKAVDELNDKE 325
Score = 33.1 bits (72), Expect = 0.079
Identities = 15/65 (23%), Positives = 34/65 (52%)
Frame = +2
Query: 728 NLYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRKDGERX 907
NL++ NL ++ + +L F +G + S KIM +E+ + + G V + + ++ +
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIM----TDEQGKSKGFGFVCYTTPEEANKA 420
Query: 908 LRXIN 922
+ +N
Sbjct: 421 VTEMN 425
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +2
Query: 731 LYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRKDGERXL 910
+++GN+ ++E Q+ EIF + GP+ + K++ D E G+ G F + +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLV---LDPETGSGKGYGFCEFFDSETTAMAV 65
Query: 911 RXINGXEI 934
R +N E+
Sbjct: 66 RKLNNSEL 73
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +2
Query: 713 DPNTTNLYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRK 892
DPN L++GNL + + L + F Y L K++ R E K RG F+S K
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVV--RDREGKTRG-----FGFVSFK 78
Query: 893 DGERXLR 913
D ++ L+
Sbjct: 79 DSDQFLK 85
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 35.9 bits (79), Expect = 0.011
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = +2
Query: 731 LYLGNLNPKITEHQLMEIFGRYGPLASIKI 820
L++ NL+ KIT ++ ++FGRYGP+ I++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL 43
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 35.1 bits (77), Expect = 0.019
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +2
Query: 731 LYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRKDGERXL 910
+YLGNL+ K+T+ L E+ + GP+ +I I PR D + G F+ +D E
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHI--PR-DRVRNSHNGFGFCEFLHEQDVEYAC 69
Query: 911 RXIN 922
+ +N
Sbjct: 70 QILN 73
Score = 32.3 bits (70), Expect = 0.14
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +2
Query: 728 NLYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRKDGERX 907
NL++GNL+P + E L + F G L + + +E R + G V++ S + +
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQV---ARDENGRSKGYGFVSYDSFETADAA 156
Query: 908 LRXIN 922
+ +N
Sbjct: 157 IEAMN 161
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.9 bits (74), Expect = 0.045
Identities = 26/105 (24%), Positives = 45/105 (42%)
Frame = +2
Query: 590 ELRQIQEERSERHKYKNVLRDKGAIEQTCDMIPDVGSYDTGDPNTTNLYLGNLNPKITEH 769
E QI+ E SE + + A T +MI D+ P L++ LNP +
Sbjct: 200 ENEQIESETSEDKLQREKEMEAEAEAVTLEMIGDLPFAHVAPPENV-LFVCKLNPVTQDE 258
Query: 770 QLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRKDGER 904
L IF R+G + S +++ D+E + F +++ E+
Sbjct: 259 DLELIFSRFGKIISCQVI---RDKETGDSLQYAFIEFDNKESVEK 300
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 33.9 bits (74), Expect = 0.045
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Frame = +2
Query: 728 NLYLGNLNPKITEHQLMEIFGRYGPLAS---IKIMWP------RSDEEKARGRNXGXVAF 880
++Y+ L+ +T L E+F Y P + ++ + P + E+ RGR G V+F
Sbjct: 206 SIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSF 265
Query: 881 MSRKDGERXLRXINGXEI 934
+ +D R + +NG ++
Sbjct: 266 ANAEDQSRAIEEMNGKQV 283
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 32.7 bits (71), Expect = 0.10
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 728 NLYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRS 835
N++LGNL ITE ++ E +GP+ IKI+ R+
Sbjct: 207 NVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.9 bits (69), Expect = 0.18
Identities = 18/80 (22%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Frame = +2
Query: 713 DPNTTNLYLGNLNPKITEHQLMEIFGRYGPLASI--KIMWPRSDEEKAR-------GRNX 865
+ ++ +Y+GN++ ++++ ++++ F +YG + SI +++ +EKA+ G
Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQY 72
Query: 866 GXVAFMSRKDGERXLRXING 925
G V F++ + E L+ G
Sbjct: 73 GFVKFVNAESIEEVLKDAKG 92
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.9 bits (69), Expect = 0.18
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 728 NLYLGNLNPKITEHQLMEIFGRYGPLASIKIM 823
N+++GNL E ++ E FG++G + IKI+
Sbjct: 300 NVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 728 NLYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRS 835
N+Y +++ +T +L I +YG + SIK + RS
Sbjct: 501 NVYFSHISDSLTTEELELILRQYGEIESIKYLKNRS 536
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.5 bits (68), Expect = 0.24
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +2
Query: 731 LYLGNLNPKITEHQLMEIFGRYGPLASIK-IMWPRSDEEKARG 856
+Y+GN+ ++ E Q+++IF + GP+ S + ++ P S + K G
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYG 49
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 31.5 bits (68), Expect = 0.24
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 731 LYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRKDGERXL 910
+++GNL P +TE L F +G + S+ + +EKA R+ V F +D + +
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVAL----HRKEKAVDRSYAFVEFDEPEDAKEAM 63
Query: 911 RXIN 922
+N
Sbjct: 64 ENMN 67
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 30.7 bits (66), Expect = 0.42
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 725 TNLYLGNLNPKITEHQLMEIFGRYGPLASIKIM 823
T L++G + P+ T +M+ F YG + K+M
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM 36
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.9 bits (64), Expect = 0.73
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 512 KQESGKPRSKQKGQDKKKSNLELFKEELRQIQE-ERSERHKYKNVLRDK 655
++E K R K+K +DKKK L+L KEE RQ +E ER + L K
Sbjct: 585 ERELKKIREKEKKRDKKK-QLKLAKEEERQRREAERLAEQAAQKALEAK 632
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 29.5 bits (63), Expect = 0.97
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = +2
Query: 479 NDSDMLRNLTLKQESGKPR------SKQKGQDKKKSNLELFKEELRQIQEERSERHKYKN 640
ND ++LR ESG+ R SK++ ++ KS EL+ + L Q + E + +
Sbjct: 562 NDENLLRETANSDESGRNRTFLNRSSKKRAENSLKSKKELYLKNLNQRYQIAHELEQELS 621
Query: 641 VLRD 652
L+D
Sbjct: 622 YLQD 625
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 731 LYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAF 880
L++GNL+ + T+ L E FG+ G + +++M + E+ + + G V F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLM---TFEDTGKCKGFGFVDF 276
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +2
Query: 497 RNLTLKQESGKPRSKQKGQDKKKSNLE---LFKEELRQIQEERSERHKYKNVLRDK 655
+ + +++ SGK SK++ KKK E K++ ++++ + S K K +RDK
Sbjct: 126 KKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDK 181
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 28.7 bits (61), Expect = 1.7
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +2
Query: 494 LRNLTLKQESGKPRSKQKGQD----KKKSNLELFKE-ELRQIQEERSERHKYKNVLRDKG 658
+ NL+L+ ++ KP+ G+D KK+ +L KE E Q ++ER R + R+
Sbjct: 8 VENLSLEAKNEKPKEVILGEDGKPLSKKALKKLEKEREKEQKRKEREAREAEEKKKREAN 67
Query: 659 AIEQTCDMIPDVG-SYDTGDPNTTNLYLGNLNPK 757
I+ + D+ + T P T + +++ K
Sbjct: 68 EIDYSAGKYGDLPLNRSTARPGRTYTQISDISAK 101
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 28.7 bits (61), Expect = 1.7
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Frame = +2
Query: 419 TSEKGKLYKPVSRLDE----KR--GGNDSDMLRNLTLKQESGKPRSKQKGQDKKKSNLEL 580
+ + G +Y PV ++ + KR G + SD++ + + R+ +G ++K+ N+ L
Sbjct: 192 SDDSGDIYLPVKKVGKFIPTKRTEGVSTSDLITRIIRDYDQYVMRNLARGVNRKELNVSL 251
Query: 581 FKEELRQIQEERSERHKYKNVLRD---KGAIEQTCDMIPDVGSY 703
FK + E RH K VLRD + T D+ D+ S+
Sbjct: 252 FK------KNELDLRHHIK-VLRDTLRNHWVSTTRDLKADIKSF 288
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.9 bits (59), Expect = 3.0
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Frame = +2
Query: 452 SRLDEKRGGNDSDMLRNLTLKQESGKPRSKQKGQDKKKSNLELFKEELRQIQEERSE-RH 628
++L KR + R + + R +KK++ + +E+LR +QEE + R
Sbjct: 76 AKLARKRREEAFNFQRKSMVDDLRERERQFYDSLEKKENERDRLQEKLRALQEESANLRR 135
Query: 629 KYKNVLRDKGAIEQTCDMIPDVGSYDTGDPNTTNLYLGNLNPKITEHQLMEIFGRYGPLA 808
+ +N LR++ + D + + ++ + L I+ +G L
Sbjct: 136 QRENRLREEQEQSKRRKQETPSSKISELDRSIRIRWKRKYADQVNDAYLRSIYSSFGTLQ 195
Query: 809 SIKIMWPRSDEEK 847
++ I S E+K
Sbjct: 196 NVVIQKDISKEKK 208
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 27.9 bits (59), Expect = 3.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 276 RNFERKKKKKPLHMYSKNLWK 338
++F RKK ++ + ++ KNLWK
Sbjct: 88 KSFSRKKYREAVSLFRKNLWK 108
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 512 KQESGKPRSKQKGQDKKKSNLELFKEELRQIQEERSERHKYKNVLRDK 655
+++ K R ++K KK LE ++E ++QE++ + + LR+K
Sbjct: 107 REQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERDQKLREK 154
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 722 YLDLRYHMSPHQGSYHRFVQWLLCL 648
Y+D YH++ H SY R V+++L +
Sbjct: 378 YVDENYHITIHVSSYERRVEFMLAV 402
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.5 bits (58), Expect = 3.9
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +2
Query: 377 VKAGTYDAGARREDTSEK-GKLYKPVSRLDEKRGGNDSDMLRNLTLKQESGKPRSKQKGQ 553
V G+ D G RE + + + P+S +SD T+ + PR KG
Sbjct: 5 VTTGSDDDGGDRESSPVMLSQSFDPMSSSSNSSSEENSDDDYEKTISSKKRHPRPNSKGV 64
Query: 554 DKKKSNLELFKEE 592
+ K+S EE
Sbjct: 65 NVKRSRRNAIVEE 77
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.5 bits (58), Expect = 3.9
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +2
Query: 713 DPNTTNLYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRK 892
D +TNLY+ NL E + +F + + S +++ R +E++RG G RK
Sbjct: 380 DTESTNLYISNLPLHWNESDISTLF-KPSKIISNRVL--RDSKEQSRG--VGFARMQDRK 434
Query: 893 DGERXLRXIN 922
E + N
Sbjct: 435 TAEDIINKFN 444
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 306 PLHMYSKNLWKLSKKLRAVPVKFGSKQEPMMQELEGKIQVKKVN 437
PLH Y+KNL + K L SK+ P ++ + +KK N
Sbjct: 225 PLHAYTKNLEESRKILVEKEALLNSKKRPQNSDITSSL-LKKPN 267
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -2
Query: 794 NDQRSPLTGVLLSLGLDFLSTD*LYLDLRYHMSPHQGSYHRFVQWLLCL*VHFCTC 627
ND ++P +L S G DF+ + + ++ H H+ S FV C V+ C
Sbjct: 189 NDNKAPYFSLLYSDGFDFIKFLHVCVCVKCHGREHRSSGKNFVYCDHCSNVYHYDC 244
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 725 TNLYLGNLNPKITEHQLMEIFGRYGPLASIK 817
TNLY+ N P E + ++F YG + ++
Sbjct: 666 TNLYVTNFPPTYDELDITKLFSAYGNVVDVR 696
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 731 LYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRKDGERXL 910
LY+ N++ K+ E + F YG + S++I P+ + + G V + +D E L
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRI--PKRFNQH---KGFGYVVMTTNQDAENAL 813
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 731 LYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNXG 868
+YL + P + ++L +I +YG + + + S + R RN G
Sbjct: 124 IYLSRIPPYMAPNKLRQILSQYGKIGRVYLTPESSAKRAQRLRNGG 169
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 5.2
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Frame = +2
Query: 344 QEAPSSTSKVWVKAG--TYDAGARREDTSEKGKLY----KPVSRLDEKRGGNDSDMLRNL 505
Q P T V+ G T + GA+ +D +K K+ + S+L D ++LR
Sbjct: 1352 QNVPKRTVTVYSDEGVATLEPGAQGDDVVDKAKMILEKMEGHSQLLTSSANPDEEVLR-A 1410
Query: 506 TLK-----QESGKPRSKQKGQDKKKSNLELFKE 589
LK Q+ PR+++KG + KS L E
Sbjct: 1411 KLKAAERLQKPAIPRTRRKGHTEPKSAKSLLAE 1443
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.6 bits (56), Expect = 6.8
Identities = 16/73 (21%), Positives = 38/73 (52%)
Frame = +2
Query: 413 EDTSEKGKLYKPVSRLDEKRGGNDSDMLRNLTLKQESGKPRSKQKGQDKKKSNLELFKEE 592
+ +E +++ RL+++R + +L ++ E + R K + + +KK +E K+E
Sbjct: 93 QSITESQRIFSEKQRLEQERFNRE--LLEKKRIEAE--RQRLKDEEERRKKELMEKEKKE 148
Query: 593 LRQIQEERSERHK 631
+I+ ++HK
Sbjct: 149 KERIRLIEEQKHK 161
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 527 KPRSKQKGQDKKKSNLELFKEELRQIQEERSERHKYKNVLRDKGAIEQTCDMI 685
K Q D K N+ LR+ E+ + + V +D G + +TCD+I
Sbjct: 244 KQGGSQGAADNTKGNIHSAGSGLRRYNEQALIKD-IQQVFKDWGKLLETCDLI 295
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 499 PKHVRVIPTTFLIQTRNRLIQFT-FFTCIFPSSSCIIGSCFDPNFTGTARSFLESFHKFF 323
P + P+ F + + FT FF + + S +I F NF T R + + K+F
Sbjct: 40 PLELSPTPSIFARNYQRNAVDFTGFFVLFWVAVSIMIFMSFLENFELTGRPVVGTIFKYF 99
Query: 322 E 320
+
Sbjct: 100 Q 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,827,620
Number of Sequences: 5004
Number of extensions: 74390
Number of successful extensions: 311
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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