Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P15
         (1197 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   3.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   5.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   9.3  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -3

Query: 160 FNTHYEQLSNSDY*CSFNRDF-----DLVNTFHSVNLKGMKFDD 44
           F T    +SN+ Y  + N+D      + +NTF   N K +K+DD
Sbjct: 306 FETSSTTMSNALYELALNQDVQKKLREEINTFCPKNNKELKYDD 349


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 398  AGARRED-TSEKGKLYKPVSRLDEKRGGNDSDMLRNLTLKQESGKPRSKQKGQDKKK 565
            AG+R ED T +  KL +     +   GG   D  R  TL     +P+ +Q+ Q +++
Sbjct: 1406 AGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRDRK-TLTSAPQQPQQQQQQQQQQQ 1461


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 821  MWPRSDEEKARGRNXGXVAFMSRKD 895
            +WP   EEK+R  +   V F+S  D
Sbjct: 1022 IWPMKGEEKSRLFHYSVVPFVSNHD 1046


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +2

Query: 788 GRYGPLASIKIMWPRSDEEKARGRNXGXVAFMSRKDGERXLRXIN 922
           G YGP    K+   + ++E   G+         RKDG    + +N
Sbjct: 200 GAYGPEKGPKVPEKKKEDEIDEGKESKTKLSQWRKDGGTVKKKVN 244


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 312 HMYSKNLWKLSKKL 353
           H Y +N+W LS KL
Sbjct: 491 HEYDQNVWVLSNKL 504


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = -1

Query: 762 VIFGFRFPKYRLVVFGS----PVSYEPTSGIIS 676
           +++G   PKYR  +F        + EP+S  +S
Sbjct: 329 IVYGISHPKYRAALFAKFPSLACAAEPSSDAVS 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,193
Number of Sequences: 438
Number of extensions: 5307
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40849839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)