Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P14
         (1142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    86   1e-17
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    29   1.6  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    28   2.8  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    28   2.8  
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    27   4.9  
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    27   4.9  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    27   6.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   6.4  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   6.4  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   8.5  

>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 333

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
 Frame = +2

Query: 557  FLLKIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMALDRVREQQKKI-KMGEIKANDLP 733
            F  +++ +     +YED +L  +A        L ++ LD++ +   ++ K G+       
Sbjct: 31   FYHEVRQMSQHPWMYEDPELQDYA--------LSILPLDKLFQDASELEKEGD---GSWG 79

Query: 734  FDTALLMELLDWFKHDFFKWVDKPDCDLCGERTVNHENAIMTIEGE---TCRVELYQCTV 904
            +   ++  LL WFK +FF WV++P C+ CG  T    N     E +      VELYQC V
Sbjct: 80   YQDYVIQALLKWFKREFFVWVNQPPCEKCGGETHMTGNGPPNEEEKWNGVRNVELYQCNV 139

Query: 905  CEGGXAMXPRYNNLRTWLXTRSGRCGXWXQXLYXAGPXXGLRXXYVYDVPDXXWXE 1072
            C G     PRYN +R  L +R GRCG W           G R  ++++  D  W E
Sbjct: 140  C-GHNQRFPRYNRIRALLDSRKGRCGEWANCFTFLCRALGSRARWIWNAEDHVWTE 194


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 20/90 (22%), Positives = 42/90 (46%)
 Frame = +2

Query: 491 NSTDVREQPKASPVHSLQTKNRFLLKIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMAL 670
           N+T + E P A+  H+L + N+    +    + +Q    +  +    D+ P+ T   ++ 
Sbjct: 193 NATSIIEHPDAANAHTLASLNQPPKHLTVSPSSIQRLSPQPYVRPTSDERPIETDSSVSA 252

Query: 671 DRVREQQKKIKMGEIKANDLPFDTALLMEL 760
            +V    +++K G+   +  P DT L  +L
Sbjct: 253 PKVANHDEELKQGK---STSPSDTVLHPDL 279


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 185 EQSIRNTDKFIIALYELLERITRILENPHDYELRSIK 295
           E+S+ ++ KF   L+E  ER+T ++E  H+Y    +K
Sbjct: 177 EKSLTSSCKF---LFEAKERLTSVVETEHEYYTELVK 210


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 61  R*NRKLQNYRNRINHLNIF*AIIKSIEIL-LNNGGHSAFS 177
           R  RKLQ   N+++  NI  +IIK IE+L + N  HS  S
Sbjct: 260 RLRRKLQGSLNKLSIANIS-SIIKEIEVLYMENSRHSVTS 298


>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 230 ELLERITRILENPHDYELRSIKKNVFKDLSKLDSF 334
           E LERI  I++NP  +++ S   N  KD++   SF
Sbjct: 62  EELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSF 96


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 230 ELLERITRILENPHDYELRSIKKNVFKDLSKLDSF 334
           E LERI  I++NP  +++ S   N  KD++   SF
Sbjct: 62  EELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSF 96


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 492 ILQTLENNLKHPQFIHCKLKTDSYSKFKIYSMVCKFMRMKIY 617
           ++  ++  +K   + +  L  D +SK  IY+ VC+F R+ I+
Sbjct: 16  LMVNVQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGRIHIF 57


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +2

Query: 530 VHSLQTKNRFLLKIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMALDRVREQQKKIKMG 709
           V   ++KN FL  +  L N    + DE L  + R +IP++   L     +R +  +I   
Sbjct: 791 VKGKRSKNIFLTNLVKLDNPFNSFGDEQLDYNYRKRIPMI-YDLRTKKYIRPEDVRIDTD 849

Query: 710 EIKAND 727
           ++  +D
Sbjct: 850 DVFKDD 855


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 379 FVVYRFESDILHVFIKRV 326
           + VYR  SDILH+F+K +
Sbjct: 736 YEVYRVFSDILHIFLKLI 753


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 744 LC*WSSWTGSSMISLNGSTSLTVIYAENEPSIMKT 848
           LC WS+   +S++S N  T L +IY    PS+ KT
Sbjct: 527 LCLWSNEYFTSLVSQNVVTLLPIIY----PSLYKT 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,375,657
Number of Sequences: 5004
Number of extensions: 87223
Number of successful extensions: 243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 609607692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)