Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P14
         (1142 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0041 - 290333-290698,290854-291861                               29   5.2  
06_01_0542 + 3877863-3878017,3878106-3878169,3878259-3878308,387...    29   9.1  
06_01_0532 + 3839807-3839961,3840050-3840113,3840203-3840252,384...    29   9.1  

>08_01_0041 - 290333-290698,290854-291861
          Length = 457

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 644 LVTLQLMALDRVREQQKKIKMGEIKANDLPFDTALLMELLDWFKHD 781
           L   ++ +  R R+Q+ ++ M  I    +   T  L ELL+WF +D
Sbjct: 141 LTNKKVRSYSRARQQEVRLVMARINEAAVARTTVDLSELLNWFTND 186


>06_01_0542 +
           3877863-3878017,3878106-3878169,3878259-3878308,
           3878393-3878583,3878767-3878827,3878959-3879031,
           3879364-3879487,3879568-3879644,3880064-3880140,
           3880748-3880819,3881313-3881425,3881518-3881522,
           3881950-3882069
          Length = 393

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 17/78 (21%), Positives = 34/78 (43%)
 Frame = +2

Query: 566 KIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMALDRVREQQKKIKMGEIKANDLPFDTA 745
           K++  F+      D +      D I L    L+ +   R   + + MG +K+  +P DT 
Sbjct: 211 KVKFFFSAAIEAWDAEFYVKVDDNINLDLAGLIEMLEARRGSQGLYMGCMKSGGVPLDTN 270

Query: 746 LLMELLDWFKHDFFKWVD 799
                  W++ +++K+ D
Sbjct: 271 FNFRGQQWYEPEWWKFGD 288


>06_01_0532 +
           3839807-3839961,3840050-3840113,3840203-3840252,
           3840337-3840527,3840711-3840771,3840903-3840975,
           3841308-3841431,3841512-3841588,3842008-3842084,
           3842692-3842763,3843257-3843369,3843462-3843466,
           3843894-3844013
          Length = 393

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 17/78 (21%), Positives = 34/78 (43%)
 Frame = +2

Query: 566 KIQDLFNGMQVYEDEDLLAHARDQIPLVTLQLMALDRVREQQKKIKMGEIKANDLPFDTA 745
           K++  F+      D +      D I L    L+ +   R   + + MG +K+  +P DT 
Sbjct: 211 KVKFFFSAAIEAWDAEFYVKVDDNINLDLAGLIEMLEARRGSQGLYMGCMKSGGVPLDTN 270

Query: 746 LLMELLDWFKHDFFKWVD 799
                  W++ +++K+ D
Sbjct: 271 FNFRGQQWYEPEWWKFGD 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,703,328
Number of Sequences: 37544
Number of extensions: 538448
Number of successful extensions: 1098
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3468127212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)