Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P13
         (1158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    80   5e-16
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    77   6e-15
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    73   1e-13
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    61   3e-10
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    51   3e-07
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    50   5e-07
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    50   6e-07
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    49   1e-06
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    40   5e-04
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    31   0.30 
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      26   8.7  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   8.7  

>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 80.2 bits (189), Expect = 5e-16
 Identities = 33/89 (37%), Positives = 56/89 (62%)
 Frame = +3

Query: 423 LLCEMECHEHAWPFLLPVNNKQFPQYKKVIKCPMDLSTIKKKLQDSSYKCKEEFASDVRL 602
           L  EM+ H  +WPF+ PV+ +  P Y +VI+ PMDLST++ +L+++ Y+  EEF  D + 
Sbjct: 355 LFTEMQNHPSSWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFIRDAKY 414

Query: 603 IFSNCEVFNEDYSPVGRAGHNMRQFFEEK 689
           IF NC  +N+  +   +    + +FF++K
Sbjct: 415 IFDNCRSYNDSNTTYYKNADRLEKFFQKK 443


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 76.6 bits (180), Expect = 6e-15
 Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
 Frame = +3

Query: 408 QFCKNLLCEMECHEHAWPFLLPVN--NKQFPQYKKVIKCPMDLSTIKKKLQDSSYKCKEE 581
           ++C  ++ +++  +++ PF +PV+   +  P Y  ++K PMDL TI+KKL    Y   +E
Sbjct: 91  KYCLAIVRQLKRTKNSAPFKVPVDPIKQNIPDYPTIVKNPMDLGTIEKKLTSYEYSVPQE 150

Query: 582 FASDVRLIFSNCEVFNEDYSPVGRAGHNMRQFFEEKWTQ 698
           F  D+ L+FSNC ++N   SPVG  G  +++ FE +  Q
Sbjct: 151 FIDDMNLMFSNCFLYNGTESPVGSMGKALQEVFERQLKQ 189



 Score = 76.6 bits (180), Expect = 6e-15
 Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
 Frame = +3

Query: 408 QFCKNLLCEMECHEH---AWPFLLPVNNK--QFPQYKKVIKCPMDLSTIKKKLQDSSYKC 572
           +FC  +L E+   ++   A+PF  PV+      P Y  VIK PMDLSTI+ KL  + Y  
Sbjct: 258 RFCSTVLKELYKRQYESFAFPFYQPVDPVACDCPDYFDVIKEPMDLSTIQSKLNKNEYST 317

Query: 573 KEEFASDVRLIFSNCEVFNEDYSPVGRAGHNMRQFFEEKW 692
            EEF SD+ L+F+NC  +N   +PV   G  +   F+EKW
Sbjct: 318 LEEFESDILLMFNNCFTYNPPGTPVHVMGRQLENVFKEKW 357


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
 Frame = +3

Query: 408 QFCKNLLCEM--ECHE-HAWPFLLPVNNKQF--PQYKKVIKCPMDLSTIKKKLQDSSYKC 572
           +FC+++L E+  + HE +A+PF  PVN      P Y KVIK PMDL T++ KL  + Y  
Sbjct: 395 KFCQSVLKELLKKQHEAYAYPFYKPVNPTACGCPDYFKVIKHPMDLGTMQNKLNHNEYAS 454

Query: 573 KEEFASDVRLIFSNCEVFNEDYSPVGRAGHNMRQFFEEKWTQS*NLTGE 719
            + F +D+ L+F NC  FN   +PV   G  +   F++ W    +   E
Sbjct: 455 MKAFEADMVLMFKNCYKFNSAGTPVHLMGKKLESIFQKLWANKPDFDSE 503



 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
 Frame = +3

Query: 459 PFLLPVN--NKQFPQYKKVIKCPMDLSTIKKKLQDSSYKCKEEFASDVRLIFSNCEVFNE 632
           PF  PV+   +  P Y  +IK P+DL T++KK     Y   + F  D+ L+FSNC ++N 
Sbjct: 253 PFRAPVDPVKQNIPDYPTIIKNPIDLGTMQKKFSSGVYSSAQHFIDDMNLMFSNCFLYNG 312

Query: 633 DYSPVGRAGHNMRQFFEEKWTQ--S*NLTGER*PQTRTRCRLAQASLVAQTGALTRRPPA 806
             SPVG  G N++  FE +  Q  S  +T    P  R R   A      + GA TRR  A
Sbjct: 313 TESPVGVMGKNLQATFERQLKQLPSAYVTSYSRPGRRPRSMTA-----PKGGARTRRQAA 367

Query: 807 V 809
           +
Sbjct: 368 M 368


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 28/61 (45%), Positives = 39/61 (63%)
 Frame = +3

Query: 447 EHAWPFLLPVNNKQFPQYKKVIKCPMDLSTIKKKLQDSSYKCKEEFASDVRLIFSNCEVF 626
           EH+  FL  V+ +  P Y  VIK PMDL TI + L++  Y  K+EF  D+ LI+SNC ++
Sbjct: 319 EHSLAFLTKVSKRDAPDYYTVIKEPMDLGTILRNLKNLHYNSKKEFVHDLMLIWSNCFLY 378

Query: 627 N 629
           N
Sbjct: 379 N 379


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 25/76 (32%), Positives = 40/76 (52%)
 Frame = +3

Query: 459 PFLLPVNNKQFPQYKKVIKCPMDLSTIKKKLQDSSYKCKEEFASDVRLIFSNCEVFNEDY 638
           PF    + + FP+Y + I+ PM L  I+KKL    Y+  E+F  D  L+F N + FN+  
Sbjct: 236 PFERLPDPRMFPEYYQAIEQPMALEVIQKKLSKHRYETIEQFVDDFNLMFDNAKSFNDPS 295

Query: 639 SPVGRAGHNMRQFFEE 686
           S V R    ++ +  +
Sbjct: 296 SQVYRDADFLKNYLAD 311


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 22/69 (31%), Positives = 38/69 (55%)
 Frame = +3

Query: 423 LLCEMECHEHAWPFLLPVNNKQFPQYKKVIKCPMDLSTIKKKLQDSSYKCKEEFASDVRL 602
           +L  +  H    PF  PVN K+ P Y  ++  P DL T+K  +++ +    +E   +V  
Sbjct: 197 MLDNISNHRFGAPFSHPVNRKEAPDYDSLVYKPQDLRTLKNMIKEGNITEVDELYREVLR 256

Query: 603 IFSNCEVFN 629
           IF+NC+++N
Sbjct: 257 IFANCKMYN 265


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 50.0 bits (114), Expect = 6e-07
 Identities = 25/75 (33%), Positives = 40/75 (53%)
 Frame = +3

Query: 462  FLLPVNNKQFPQYKKVIKCPMDLSTIKKKLQDSSYKCKEEFASDVRLIFSNCEVFNEDYS 641
            FL P N K +P Y  +IK P+ L  IK+ +++  Y    E  +D  L+F+N   +NE++S
Sbjct: 1544 FLYPPNRKLYPDYYIIIKRPIALGKIKRNIKNDRYGDVGELIADFMLMFNNAYTYNEEHS 1603

Query: 642  PVGRAGHNMRQFFEE 686
             V      M +  +E
Sbjct: 1604 IVYEDAKLMEKTLKE 1618


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 25/76 (32%), Positives = 39/76 (51%)
 Frame = +3

Query: 462  FLLPVNNKQFPQYKKVIKCPMDLSTIKKKLQDSSYKCKEEFASDVRLIFSNCEVFNEDYS 641
            FL   + K +P Y  +IK P+ L  I+K +  + YK  E   SD+  +F+N   +NE+ S
Sbjct: 1092 FLELPSKKLYPDYYMIIKSPIALDAIRKHINGTFYKTLEAMKSDLMTMFNNARTYNEEGS 1151

Query: 642  PVGRAGHNMRQFFEEK 689
             V    + M+   E K
Sbjct: 1152 FVYEDANKMQTAMETK 1167


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 477 NNKQFPQYKKVIKCPMDLSTIKKKLQDSSYKCKEEFASDVRLIFSNCEVFN 629
           + + +P Y ++IK PM +  ++K+ +   Y   E F  D+  +F N + +N
Sbjct: 175 SKRLYPDYYEIIKSPMTIKMLEKRFKKGEYTTLESFVKDLNQMFINAKTYN 225



 Score = 37.1 bits (82), Expect = 0.005
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +3

Query: 477 NNKQFPQYKKVIKCPMDLSTIKKKLQDSSYKCKEEFASDVRLIFSNCEVFN 629
           + + FP Y ++I+ P+    ++ K +   Y    +F  D+RL+ SN + +N
Sbjct: 42  SKRYFPDYYQIIQKPICYKMMRNKAKTGKYLSMGDFYDDIRLMVSNAQTYN 92


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 583 NSSLHLYELSCSFFL---MVERSMGHLMTFLYCGNCLLLTGSRNGHACSWHSISQS 425
           + SLHLY L+ S  L   M+E       +FL+C N  LL  S +G   +W+ ++++
Sbjct: 654 DGSLHLYSLTGSRLLPPIMIESKA----SFLHCNNAYLLCISSSGMVYAWNVVNKT 705


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 456 WPFLL--PVNNKQFPQYKKVIK 515
           W F+L  P NN+ FP Y  ++K
Sbjct: 124 WDFVLRKPCNNRTFPNYMGIVK 145


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 448 SWHSISQS--RFLQNCSSFKSFLAEFFSFLA 362
           SW S+ Q    FL+  S F +FL   F F A
Sbjct: 92  SWASVMQESFHFLEKISMFDTFLVRVFQFCA 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,774
Number of Sequences: 5004
Number of extensions: 45925
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)