Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P09
         (1184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.96 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 19/61 (31%), Positives = 19/61 (31%)
 Frame = -3

Query: 630 PPPPLFXXFFXPLXPXFFXXXFPPFWGXXXPPPPPXRGXXXFFGGGXXXPPXXXPXXPXG 451
           PPPP       P           P  G   PPPPP        G G   PP   P    G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP----GVAGAGPPPPPPPPPAVSAG 788

Query: 450 G 448
           G
Sbjct: 789 G 789



 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = -2

Query: 967 PXXXPPXFFFXGGVXKXPPP--XXGGGPPP 884
           P   PP     GG    PPP    G GPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.150    0.475 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,951
Number of Sequences: 5004
Number of extensions: 29899
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)