Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_P09
(1184 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 34 0.25
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 34 0.25
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 34 0.25
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.59
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 31 1.4
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 31 1.4
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 31 1.8
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 29 5.5
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 29 7.2
SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0) 29 7.2
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.6
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 33.9 bits (74), Expect = 0.25
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +1
Query: 451 PPGXXGXXXGGXXPPPPKKXXXPPXGGGGGGXXPPKXG 564
PP G GG PPPPK PP G PP G
Sbjct: 251 PPPMRGPTSGGE-PPPPKNAPPPPKRGSSNPPPPPTRG 287
Score = 32.3 bits (70), Expect = 0.78
Identities = 22/62 (35%), Positives = 22/62 (35%)
Frame = -3
Query: 630 PPPPLFXXFFXPLXPXFFXXXFPPFWGXXXPPPPPXRGXXXFFGGGXXXPPXXXPXXPXG 451
PPPP PL P PP G PPPPP PP P P G
Sbjct: 318 PPPPPPSRDQVPLPP-------PPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAP-QPLG 369
Query: 450 GP 445
GP
Sbjct: 370 GP 371
Score = 30.7 bits (66), Expect = 2.4
Identities = 20/55 (36%), Positives = 20/55 (36%)
Frame = -3
Query: 630 PPPPLFXXFFXPLXPXFFXXXFPPFWGXXXPPPPPXRGXXXFFGGGXXXPPXXXP 466
PPPPL P P PP PPPPP R GG PP P
Sbjct: 331 PPPPLRGQIAPPPPPI----SKPPTSTRSAPPPPPGRAPQP-LGGPPPPPPGRRP 380
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Frame = -3
Query: 630 PPPPLFXXFFXPLXPXFFXXXFPPFWGXXXPPPPPXRG--XXXFFGGGXXXPP 478
PPPP+ P PP G PPPPP RG F G PP
Sbjct: 250 PPPPMRGPTSGGEPPPPKNAPPPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPP 302
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 33.9 bits (74), Expect = 0.25
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +1
Query: 451 PPGXXGXXXGGXXPPPPKKXXXPPXGGGGGGXXPPKXG 564
PP G GG PPPPK PP G PP G
Sbjct: 163 PPPMRGPTSGGE-PPPPKNAPPPPKRGSSNPPPPPTRG 199
Score = 32.3 bits (70), Expect = 0.78
Identities = 22/62 (35%), Positives = 22/62 (35%)
Frame = -3
Query: 630 PPPPLFXXFFXPLXPXFFXXXFPPFWGXXXPPPPPXRGXXXFFGGGXXXPPXXXPXXPXG 451
PPPP PL P PP G PPPPP PP P P G
Sbjct: 230 PPPPPPSRDQVPLPP-------PPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAP-QPLG 281
Query: 450 GP 445
GP
Sbjct: 282 GP 283
Score = 30.7 bits (66), Expect = 2.4
Identities = 20/55 (36%), Positives = 20/55 (36%)
Frame = -3
Query: 630 PPPPLFXXFFXPLXPXFFXXXFPPFWGXXXPPPPPXRGXXXFFGGGXXXPPXXXP 466
PPPPL P P PP PPPPP R GG PP P
Sbjct: 243 PPPPLRGQIAPPPPPI----SKPPTSTRSAPPPPPGRAPQP-LGGPPPPPPGRRP 292
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Frame = -3
Query: 630 PPPPLFXXFFXPLXPXFFXXXFPPFWGXXXPPPPPXRG--XXXFFGGGXXXPP 478
PPPP+ P PP G PPPPP RG F G PP
Sbjct: 162 PPPPMRGPTSGGEPPPPKNAPPPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPP 214
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 33.9 bits (74), Expect = 0.25
Identities = 20/62 (32%), Positives = 21/62 (33%)
Frame = -3
Query: 630 PPPPLFXXFFXPLXPXFFXXXFPPFWGXXXPPPPPXRGXXXFFGGGXXXPPXXXPXXPXG 451
PPPP P+ PP G PPPPP G G PP P
Sbjct: 346 PPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPPPGRGAPPP 405
Query: 450 GP 445
GP
Sbjct: 406 GP 407
Score = 31.9 bits (69), Expect = 1.0
Identities = 21/62 (33%), Positives = 21/62 (33%)
Frame = -3
Query: 630 PPPPLFXXFFXPLXPXFFXXXFPPFWGXXXPPPPPXRGXXXFFGGGXXXPPXXXPXXPXG 451
PPPP P P PP PPPP GG PP P P G
Sbjct: 316 PPPPARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPVGGAAPPPP---PPPPVG 372
Query: 450 GP 445
GP
Sbjct: 373 GP 374
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 32.7 bits (71), Expect = 0.59
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 454 PGXXGXXXGGXXPPPPKKXXXPPXGGG-GGGXXPPKXGK 567
P G GG PP + PP G G GGG PP G+
Sbjct: 569 PPPPGAGQGGPPPPGAGQEGPPPPGAGQGGGPPPPGAGQ 607
Score = 31.1 bits (67), Expect = 1.8
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Frame = +1
Query: 454 PGXXGXXXGGXXPPPP--KKXXXPPXGGG-GGGXXPPKXGKXXXKK--XGXKGXKKXXKK 618
P G GG PPP + PP G G GGG PP G+ G +G
Sbjct: 536 PPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQEGPPPPGAG 595
Query: 619 GGGG 630
GGG
Sbjct: 596 QGGG 599
Score = 30.7 bits (66), Expect = 2.4
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +1
Query: 454 PGXXGXXXGGXXPPPP--KKXXXPPXGGG-GGGXXPPKXGK 567
P G GG PPP + PP G G GGG PP G+
Sbjct: 503 PPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQ 543
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 885 GGGPPPXXGGGXXKTPPXKKKXGGX*XGKKXXXGPP 992
GG PPP G G + PP + GG GPP
Sbjct: 545 GGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPP 580
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +3
Query: 885 GGGPPPXXGGGXXKTPPXKKKXGGX*XGKKXXXGPP 992
GGGPPP G PP + G G GPP
Sbjct: 566 GGGPPPPGAGQGGPPPPGAGQEGPPPPGAGQGGGPP 601
Score = 29.9 bits (64), Expect = 4.1
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 451 PPGXXGXXXGGXXPPPPKKXXXPPXGGGGGGXXPPKXGK 567
PP G G P + PP G G GG PP G+
Sbjct: 548 PPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGPPPPGAGQ 586
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 885 GGGPPPXXGGGXXKTPPXKKKXGG-X*XGKKXXXGPP 992
GG PPP G G + PP + GG G GPP
Sbjct: 512 GGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPP 548
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +1
Query: 451 PPGXXGXXXGGXXPPPPKKXXXPPXGGG-GGGXXPPKXGK 567
PP G G P + PP G G GGG PP G+
Sbjct: 515 PPPGAGQGWGQPPPGAGQGGGPPPPGAGQGGGPPPPGAGQ 554
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 967 PXXXPPXFFFXGGVXKXPPPXXGGGPPP 884
P PP F GG PPP G PPP
Sbjct: 197 PPPPPPPPGFPGGAPPPPPPPFGAPPPP 224
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 31.5 bits (68), Expect = 1.4
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Frame = +1
Query: 451 PPGXXGXXXGGXXPPPPKKXXX-----PPXGGGGGGXXPPKXG 564
PP G GG PPPP PP GGG PP G
Sbjct: 664 PPPPPGGQAGGAPPPPPPPLPGGAAPPPPPPIGGGAPPPPPPG 706
Score = 30.7 bits (66), Expect = 2.4
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -2
Query: 991 GGPXXXFXPXXXPPXFFFXGGVXKXPPPXXGGGPPP 884
GG P PP GG PPP GGG PP
Sbjct: 669 GGQAGGAPPPPPPP---LPGGAAPPPPPPIGGGAPP 701
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 31.1 bits (67), Expect = 1.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 481 GXXPPPPKKXXXPPXGGGGGGXXPP 555
G PPPP PP G GG PP
Sbjct: 311 GGAPPPPPPPPPPPPGDGGAPPPPP 335
Score = 30.3 bits (65), Expect = 3.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 478 GGXXPPPPKKXXXPPXGGGGGGXXPP 555
GG PPPP PP GG PP
Sbjct: 311 GGAPPPPPPPPPPPPGDGGAPPPPPP 336
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 30.3 bits (65), Expect = 3.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 490 PPPPKKXXXPPXGGGGGGXXPPKXG 564
PPPP PP GGG PP G
Sbjct: 955 PPPPPGGSAPPPGGGAPPLPPPPGG 979
Score = 29.1 bits (62), Expect = 7.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 478 GGXXPPPPKKXXXPPXGGGGGGXXPPKXG 564
G PPPP P GGG PP G
Sbjct: 950 GNAPPPPPPPGGSAPPPGGGAPPLPPPPG 978
Score = 28.7 bits (61), Expect = 9.6
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -3
Query: 630 PPPPLFXXFFXPLXPXFFXXXFPPF-WGXXXPPPPPXRGXXXFFGGGXXXPPXXXP 466
PPPP P P PP G PPPPP G GGG PP P
Sbjct: 923 PPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGG--APPLPPP 976
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 29.5 bits (63), Expect = 5.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 631 PPPPPFXXIFXPPXPP 584
PPPPP +F PP PP
Sbjct: 653 PPPPPGGGMFPPPPPP 668
Score = 29.1 bits (62), Expect = 7.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 885 GGGPPPXXGGGXXKTPPXKKKXGG 956
GG PPP GGG PP GG
Sbjct: 650 GGIPPPPPGGGMFPPPPPPPPGGG 673
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 29.1 bits (62), Expect = 7.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 955 PPXFFFXGGVXKXPPPXXGGGPPP 884
PP GG+ PPP GG PPP
Sbjct: 196 PPPPPGPGGIPPPPPPIRGGVPPP 219
>SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)
Length = 304
Score = 29.1 bits (62), Expect = 7.2
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +2
Query: 449 PPXGXXGXXXGGXXXPPPKKXXXPRXGGGGGXKXPQXGGKXXXKKXGXRG 598
P G GG P GGGGG K P+ GG+ + G RG
Sbjct: 35 PGFSPRGAGRGGGRGGPRGGGRGGGRGGGGGFKSPRGGGRGGG-RGGGRG 83
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.7 bits (61), Expect = 9.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 637 FXPPPPPFXXIFXPPXPP 584
+ PPPPP F PP PP
Sbjct: 423 YIPPPPPGFPQFQPPPPP 440
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.310 0.150 0.475
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,713,175
Number of Sequences: 59808
Number of extensions: 321490
Number of successful extensions: 1063
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3657251350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
- SilkBase 1999-2023 -