Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P07
         (1169 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...   151   8e-37
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...   147   1e-35
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...   140   2e-33
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    35   0.14 

>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score =  151 bits (367), Expect = 8e-37
 Identities = 95/219 (43%), Positives = 117/219 (53%), Gaps = 8/219 (3%)
 Frame = +2

Query: 107 LNDLNQXLAEXSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA-----SYTPAE 271
           L  L++ L   SY+SGY  S+ D+ VF  +  APAA+  +V RWY+ I+     S   AE
Sbjct: 33  LQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAE 92

Query: 272 RKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADK 451
            +     ++                      VDLFG                  +A A K
Sbjct: 93  GEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE------RAAAVK 146

Query: 452 KSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQI 631
            S K     KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI KLQI
Sbjct: 147 ASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQI 206

Query: 632 MCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 739
           M  I DD VSVD L E     +   +F+QS DI AFNKI
Sbjct: 207 MMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score =  147 bits (357), Expect = 1e-35
 Identities = 92/218 (42%), Positives = 115/218 (52%), Gaps = 7/218 (3%)
 Frame = +2

Query: 107 LNDLNQXLAEXSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKTWS 286
           L  L Q L+  +YVSG   S+ D++VF  V   P A  P+  RWY+ +A+   +     +
Sbjct: 14  LKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKA 73

Query: 287 QGTS----PLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKK 454
            G +                          +DLFG                  +  A K 
Sbjct: 74  VGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD-------ERAASKA 126

Query: 455 SKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIM 634
           S K     KSS+LLDVKPWDDETDMK++E  VR+++MEGL WGASKLVPVGYGI KLQIM
Sbjct: 127 SSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIM 186

Query: 635 CVIEDDKVSVD-LLTEKIQE--FEDFVQSVDIAAFNKI 739
             I DD VSVD L+ E + E    +FVQS DI AFNKI
Sbjct: 187 LTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score =  140 bits (339), Expect = 2e-33
 Identities = 91/222 (40%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
 Frame = +2

Query: 107 LNDLNQXLAEXSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTPAE 271
           L  L++ L   SY+SGY  S  D+ V+     AP+++  +V RW+  I      S   A+
Sbjct: 14  LKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTAD 73

Query: 272 R---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAY 442
               K  S                          VDLFG                  +A 
Sbjct: 74  GQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE------RAA 127

Query: 443 ADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINK 622
           A K S K     KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI K
Sbjct: 128 AVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKK 187

Query: 623 LQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 739
           LQIM  I DD VSVD L E     +   +++QS DI AFNKI
Sbjct: 188 LQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
 Frame = +2

Query: 107 LNDLNQXLAEXSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 250
           L +LNQ L++ S +  +G+ PS AD+ VF  +       G+      PHVLRW + I
Sbjct: 76  LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,917,595
Number of Sequences: 37544
Number of extensions: 451553
Number of successful extensions: 3328
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3210
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3573221976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)