Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P06
         (1155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   264   1e-71
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    27   4.9  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   6.5  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   6.5  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    26   8.6  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    26   8.6  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  264 bits (648), Expect = 1e-71
 Identities = 123/244 (50%), Positives = 159/244 (65%), Gaps = 1/244 (0%)
 Frame = +2

Query: 224 LSKT-LLDRYRDLPLPEDKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXX 400
           LSK  +L++Y DLP    KV+A Y+WIDG   H+R K  TL+  P +   L +WN+    
Sbjct: 10  LSKAAILNKYADLP-QNGKVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGSS 67

Query: 401 XXXXXXXXXXXHLKPQAIYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDRCRD 580
                       LKP A+Y DPFRRG+++LV+   Y     P   NHR  C +  ++  D
Sbjct: 68  TGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHAD 127

Query: 581 HEPWFGIEQEYVLLDSDLRPFGWPTTGSPPAQGPYYCGVGANKVFARDLIEAHYKCCLYA 760
            E WFGIEQEY +LD   RPFGWP  G P  QGP+YCGVG  +VFARD++EAHYK CLYA
Sbjct: 128 KETWFGIEQEYTMLDYYDRPFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYA 187

Query: 761 GVPITGTNAEAMLSQWEFQVGPSVGVSAGDDLWIARFILHRLAEEFGVIVTFDPKPGVGL 940
           G+ I+G NAE M SQWE+QVGP  G+  GD LW++RF+LHR+AE+FGV ++F PKP +G 
Sbjct: 188 GINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLLHRIAEDFGVKISFHPKPILG- 246

Query: 941 EWFG 952
           +W G
Sbjct: 247 DWNG 250



 Score = 35.9 bits (79), Expect = 0.011
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 930  VSDWNGSGAHHNFSTXKMRXEGGI 1001
            + DWNG+G H N ST   R EGGI
Sbjct: 245  LGDWNGAGCHTNVSTKDTRAEGGI 268


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 182 ILSGPVLKNSPNAFLSKTLLD 244
           ++  P +KN PN F+SK L+D
Sbjct: 447 VILDPHIKNDPNYFVSKELID 467


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 125 LSGARKMSETQNKVQXNPKILSGPVLKNSPNAFLS 229
           +SG+  + E+  ++    K LS P +KN+ N  LS
Sbjct: 159 ISGSITIPESDQQINLQNKFLSTPSIKNNANKSLS 193


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = -3

Query: 781 RTCDRHSSIQTAFIMGFNEIPREDLVSSNAAI------IWSLGRRASSCRPPKRSKVRVE 620
           R+   HS   T+     N   +++ +S+  ++      + SL ++ S+   P   +  ++
Sbjct: 157 RSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQSSPNLASLSKQPSTVHAPSTRQRDLK 216

Query: 619 EHVLLLYAEPRLVVSAAVV 563
             +L LYA PR  VS++ +
Sbjct: 217 SSILSLYASPRPQVSSSSI 235


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 209 SSLAPDPIKFLDXLALCFEFPTFF*HRLITFYC 111
           S + P  ++++   +L  ++P FF H  +T +C
Sbjct: 258 SGILPYFLQWMAVFSLYAKYPAFFEHHFLTIFC 290


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 140 KMSETQNKVQXNPKILSGPVL-KNSPNAFLSKTLLDRYRDLPLPEDK 277
           K  E +++++   K + G  + +NS    LS  LLD+Y    +P+D+
Sbjct: 259 KAKEYEDRIRNAGKFVFGENMDRNSSGLLLSDELLDQYSISNIPKDE 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,279,409
Number of Sequences: 5004
Number of extensions: 92544
Number of successful extensions: 256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 617576420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)