Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_P06
(1155 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 258 5e-69
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 255 6e-68
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 225 5e-59
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 223 2e-58
08_02_1178 + 24958623-24959894 29 7.0
11_01_0136 + 1135170-1135406,1135854-1136240 29 9.2
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 29 9.2
02_05_0774 + 31667839-31668540 29 9.2
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 258 bits (633), Expect = 5e-69
Identities = 117/230 (50%), Positives = 150/230 (65%), Gaps = 3/230 (1%)
Frame = +2
Query: 272 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQA 451
+K++A Y+WI GSG +R K RTL+ P LP WNY L PQA
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 452 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYD--RCRDHEPWFGIEQEYVLLD 625
I++DPFR+GN++LVMCD Y + +P TN R + + EPW+GIEQEY LL
Sbjct: 77 IFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQ 136
Query: 626 SDLR-PFGWPTTGSPPAQGPYYCGVGANKVFARDLIEAHYKCCLYAGVPITGTNAEAMLS 802
D+ P GWP G P QGPYYCG+GA+K F RD++++HYK CLYAG+ I+G N E M
Sbjct: 137 KDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPG 196
Query: 803 QWEFQVGPSVGVSAGDDLWIARFILHRLAEEFGVIVTFDPKPGVGLEWFG 952
QWEFQVGPSVG+SAGD +W+AR+IL R+ E GV+V+FDPKP G +W G
Sbjct: 197 QWEFQVGPSVGISAGDQVWVARYILERITEIAGVVVSFDPKPIPG-DWNG 245
Score = 38.7 bits (86), Expect = 0.009
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 936 DWNGSGAHHNFSTXKMRXEGG 998
DWNG+GAH N+ST MR +GG
Sbjct: 242 DWNGAGAHTNYSTKSMRNDGG 262
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 255 bits (624), Expect = 6e-68
Identities = 112/222 (50%), Positives = 147/222 (66%), Gaps = 3/222 (1%)
Frame = +2
Query: 272 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQA 451
DK++A Y+W+ G+G +R K RT++ E P +LP WNY L PQA
Sbjct: 816 DKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQA 875
Query: 452 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYD--RCRDHEPWFGIEQEYVLLD 625
I++DPFR GN++LVMCDTY + +P TN R + + + + PWFGIEQEY LL
Sbjct: 876 IFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLLQ 935
Query: 626 SDLR-PFGWPTTGSPPAQGPYYCGVGANKVFARDLIEAHYKCCLYAGVPITGTNAEAMLS 802
D+ P GWP G P QGPYYC VG++K F RD+ +AHYK CLYAG+ I+GTN E M
Sbjct: 936 RDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPG 995
Query: 803 QWEFQVGPSVGVSAGDDLWIARFILHRLAEEFGVIVTFDPKP 928
QWE+QVGPSVG+ AGD +WI+R+IL R+ E+ GV++T DPKP
Sbjct: 996 QWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKP 1037
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 225 bits (550), Expect = 5e-59
Identities = 103/215 (47%), Positives = 136/215 (63%), Gaps = 3/215 (1%)
Frame = +2
Query: 317 HVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQAIYRDPFRRGNHVLVM 496
H++ + TL+ + P LP WN+ L PQAI+RDPFR+G ++LVM
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVM 118
Query: 497 CDTYDYSMQPTKTNHRIKCQEAYDR--CRDHEPWFGIEQEYVLLDSDLR-PFGWPTTGSP 667
CD Y + +P TN+R + + EPW+GIEQEY LL + P GWP G P
Sbjct: 119 CDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGYP 178
Query: 668 PAQGPYYCGVGANKVFARDLIEAHYKCCLYAGVPITGTNAEAMLSQWEFQVGPSVGVSAG 847
QGPYYC GA+K + RD+++AHYK CL+AG+ I+G NAE M QWEFQ+GP VGVSAG
Sbjct: 179 GPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINAEVMPGQWEFQIGPVVGVSAG 238
Query: 848 DDLWIARFILHRLAEEFGVIVTFDPKPGVGLEWFG 952
D +W+AR+IL R+ E GV+V+FDPKP G +W G
Sbjct: 239 DHVWVARYILERITEIAGVVVSFDPKPIPG-DWNG 272
Score = 37.9 bits (84), Expect = 0.015
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 936 DWNGSGAHHNFSTXKMRXEGG 998
DWNG+GAH N+ST MR GG
Sbjct: 269 DWNGAGAHTNYSTKSMRSNGG 289
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 223 bits (546), Expect = 2e-58
Identities = 106/230 (46%), Positives = 138/230 (60%), Gaps = 3/230 (1%)
Frame = +2
Query: 272 DKVLATYVWIDGSGEHVRCKDRTLNYIPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQA 451
DK++A Y+W+ GSG +R K RT+ LP WNY L PQA
Sbjct: 17 DKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 452 IYRDPFRRGNHVLVMCDTYDYSMQPTKTNHRIKCQEAYDR--CRDHEPWFGIEQEYVLLD 625
I++DPFRRG+++LVMCD Y +P TN R + + PW+GIEQEY LL
Sbjct: 77 IFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLLQ 136
Query: 626 SDLR-PFGWPTTGSPPAQGPYYCGVGANKVFARDLIEAHYKCCLYAGVPITGTNAEAMLS 802
D+ P GWP GPYYC GA K F RD+++AHYK C+YAG+ I+G N E M
Sbjct: 137 KDVNWPLGWP--------GPYYCAAGAEKAFGRDIVDAHYKACIYAGINISGINGEVMPG 188
Query: 803 QWEFQVGPSVGVSAGDDLWIARFILHRLAEEFGVIVTFDPKPGVGLEWFG 952
QWEFQVGPSVG++A D +W+AR+IL R+ E GV+++ DPKP G +W G
Sbjct: 189 QWEFQVGPSVGIAAADQVWVARYILERVTEVAGVVLSLDPKPIPG-DWNG 237
Score = 38.7 bits (86), Expect = 0.009
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +3
Query: 936 DWNGSGAHHNFSTXKMRXEGG 998
DWNG+GAH NFST MR GG
Sbjct: 234 DWNGAGAHTNFSTKSMREPGG 254
>08_02_1178 + 24958623-24959894
Length = 423
Score = 29.1 bits (62), Expect = 7.0
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -3
Query: 607 LLYAEPRLVVSAAVVRFLALNTVVCLCWLHA 515
L YA P V S A +RF V LC LHA
Sbjct: 98 LRYALPDRVFSPAAIRFYVAEIVSALCELHA 128
>11_01_0136 + 1135170-1135406,1135854-1136240
Length = 207
Score = 28.7 bits (61), Expect = 9.2
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +1
Query: 187 IGSGAK--ELSKCIPLEDTVGPVQRSTAAGRQGPRHIRMDRRLRRACSLQRQDFELHSRD 360
I S A+ + +K IP+ + P + GR+ R + M L+R CS + E +
Sbjct: 82 IASSARVHQFTKSIPIPNKATPSEEEELKGREEDRCVAMTNELKR-CSKEATPSEEKAAK 140
Query: 361 S*RPADMELRRQLYRPDDKHELRHAPEAP 447
+ + ++++ H L P AP
Sbjct: 141 KMKKEEAVKKKRMPMERVHHLLSMVPRAP 169
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 28.7 bits (61), Expect = 9.2
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = +1
Query: 271 RQGPRHIRMDRRLRRACSLQRQDFELHSRDS*RPADMELRRQLYRPDDKHELRHAPEAPG 450
R P H R LR A +L+R + +++ + +++R L H + P++ G
Sbjct: 71 RANPTHHRR-LLLRSANTLERNTLKKKPKEA-VTTEEKVKRDLSHT--VHGVHPPPQSAG 126
Query: 451 HIQGPVPARKPRACHVRHIRLQH 519
+ AR PR H H RL H
Sbjct: 127 DLSA---ARNPRGAHFNHRRLHH 146
>02_05_0774 + 31667839-31668540
Length = 233
Score = 28.7 bits (61), Expect = 9.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 602 EQEYVLLDSDLRPFGWPT--TGSPPAQGPYYCGVGA 703
+Q+ L + LRP G P +GSPP GP+ GA
Sbjct: 23 QQQRALAGAFLRPRGQPMKQSGSPPRAGPFAAVAGA 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,222,192
Number of Sequences: 37544
Number of extensions: 705355
Number of successful extensions: 2050
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3514835996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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