Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P05
         (1161 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   2.5  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    24   2.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   5.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   5.8  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 427 SNDHRYSCEDC 395
           SN +RYSC DC
Sbjct: 282 SNVYRYSCRDC 292


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 427 SNDHRYSCEDC 395
           SN +RYSC DC
Sbjct: 40  SNVYRYSCRDC 50


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 661 ICTARQPFCP*TYLFDQLFLMT 726
           ICT  QP      +FD+L LM+
Sbjct: 273 ICTIHQPSSEVYSMFDKLLLMS 294


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 661 ICTARQPFCP*TYLFDQLFLMT 726
           ICT  QP      +FD+L LM+
Sbjct: 273 ICTIHQPSSEVYSMFDKLLLMS 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,783
Number of Sequences: 336
Number of extensions: 4159
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 33815816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)