Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P05
         (1161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    29   0.93 
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         28   2.2  

>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 466 CKLPVQASFSLVVSNDHRYSCEDCG 392
           C++ +   FS+ + N HRY C  CG
Sbjct: 259 CRMYINP-FSIFIDNGHRYRCNSCG 282


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 681 ILSLDISFRPI--ISNDQFTKTFFIYYFYVISSLRNCII-IKY 800
           ++  D ++R    ++ND F KT ++ Y ++     NC++ +KY
Sbjct: 9   VIKEDFTYRECSDVANDVFKKTQWLLYVFLFIIFANCVVDVKY 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,684,205
Number of Sequences: 5004
Number of extensions: 65847
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)