Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P04
         (1110 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    46   7e-06
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   6.2  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   6.2  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   8.2  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 46.4 bits (105), Expect = 7e-06
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +3

Query: 543 YEEWFEKLELPDTLASWFSITELHVWLLMVR 635
           +E W++K E+P T  SWF IT+LH+W+L  R
Sbjct: 123 FEFWYQKCEIPMTFQSWFQITQLHLWILHTR 153



 Score = 34.3 bits (75), Expect = 0.031
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 832 LVAYDEG-LSDDKILAAAIWRRFYSLSENTDVENVEKMVSFIRRQI 966
           +  YD+G L  D +LA ++WR  +    + D+  +E +V FIR  +
Sbjct: 208 IFGYDQGMLGSDAVLATSVWRNLFVGRPDVDLVILETIVKFIRLNV 253


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 729  LWADVSSRIKLLEGANPSIAKKQVSELSEQFQAALGS 839
            LW +VS R  + + + PS     V E  E+++ ALG+
Sbjct: 1256 LWHEVSVRAGVAQTSKPSFDAPLVLEAIEKYKNALGA 1292


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +3

Query: 291 LKETKMLNSRV-IAQVLLQQRH-KIRNICNPGIIKCNKIYREHSTVAAE 431
           L E+K+ NS++   Q L+ +R  +I N+   GI + N+I+R+ ST+  E
Sbjct: 155 LTESKISNSQLEYQQRLINERQGEIENLTQ-GINELNEIFRDLSTIINE 202


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 796 CFFAIDGFAPSNSLI 752
           C+F  D FAPSNSL+
Sbjct: 499 CYFCNDIFAPSNSLV 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,206,125
Number of Sequences: 5004
Number of extensions: 86758
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 587693690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)