Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P03
         (1137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...   273   3e-74
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    27   3.7  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   4.8  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   6.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   6.4  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   8.5  

>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score =  273 bits (670), Expect = 3e-74
 Identities = 137/257 (53%), Positives = 179/257 (69%), Gaps = 11/257 (4%)
 Frame = +3

Query: 201 MAKSSFEYVKKFEHDDSLLPNTWIVIRLDGKCFHKFADDHNFTKPNDLRALKLMNYAAYT 380
           MAKS FEYVK++E  D LLP T+IVIR+DGK FHKF   H+F KPNDLR L LMN AA  
Sbjct: 1   MAKSRFEYVKQYERLDRLLPETYIVIRIDGKGFHKFTKKHDFEKPNDLRCLNLMNAAARV 60

Query: 381 VLKEYSDILLSFGQSDEYSFVLRKDSCLYKRRSAKLLTTINSKFSSSYVFYWNKFFEHLP 560
           V+ E++DI+L++G SDEYSFV  K + LY+RR +KL++ + S F+S++VF W K F+ +P
Sbjct: 61  VMSEFTDIVLAYGDSDEYSFVWSKSTELYERRESKLVSHVCSLFTSAFVFNWPKHFD-IP 119

Query: 561 LKYPPCFDGRIVLYPCDENLIDYMKWRQADVHINNLYNTTFWTLILKGQLTPVQAEKRLS 740
           L   P FDGR VLYP  + L DY+ WRQ D HINNLYNTTFW LILKG  T  QAE+ L 
Sbjct: 120 LLSLPSFDGRAVLYPNMKVLRDYLHWRQVDCHINNLYNTTFWMLILKGGFTNTQAEEYLK 179

Query: 741 GTVSADKNEILFQEFNMNYNNEPEIFKRGTILLRKSI---LHN-------KVNKSIIVDV 890
           GTVSA+K+EILF +F +NYN EPEI+K+G+I +R+ I    H        K  K +++ +
Sbjct: 180 GTVSAEKHEILFSKFGINYNFEPEIYKKGSIWIREPIDQEWHQQDKKFSVKQKKKMVLSI 239

Query: 891 -HDDMLKDKFWKENIYI 938
            H  ++ D FW    ++
Sbjct: 240 LHVSLIDDDFWTSRPFL 256


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 23/99 (23%), Positives = 40/99 (40%)
 Frame = +3

Query: 489 LTTINSKFSSSYVFYWNKFFEHLPLKYPPCFDGRIVLYPCDENLIDYMKWRQADVHINNL 668
           L+ I  K  S  +  W+  F+H+ L+              +EN   +    ++D+ INNL
Sbjct: 89  LSDILQKAQSQNLDIWDYNFDHVDLRLK------------EENFDFWKSQYRSDILINNL 136

Query: 669 YNTTFWTLILKGQLTPVQAEKRLSGTVSADKNEILFQEF 785
             T F +++     +P   E  L    +   N  +F  F
Sbjct: 137 TETLFESIVPDTTNSPFSTEAFLQAVENGHLNHEMFTSF 175


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 801 NEPEIFKRGTILLRKSI--LHNKVNKSIIVDVHDDMLKDKFWK-ENIYILSVKKS 956
           N PE  +     L+KSI  L NKVNKS I D+  ++ ++   +   +Y  S+ K+
Sbjct: 111 NTPEYQRMQWEALKKSINGLINKVNKSNIRDIIPELFQENIIRGRALYCRSIMKA 165


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 25/95 (26%), Positives = 35/95 (36%)
 Frame = +3

Query: 432 YSFVLRKDSCLYKRRSAKLLTTINSKFSSSYVFYWNKFFEHLPLKYPPCFDGRIVLYPCD 611
           ++F   KD  +     +  L  I   F+S +  Y   F +   LK P      I  Y C 
Sbjct: 300 HNFEDSKDVLITNFHPSMPLGLIMGVFNSVFAGYCTIFCDEEVLKTPGLLAYLITKYRCT 359

Query: 612 ENLIDYMKWRQADVHINNLYNTTFWTLILKGQLTP 716
            +L DY   +Q    + N       TL  K   TP
Sbjct: 360 YSLFDYAGLKQT---VYNYQEDPKSTLSFKKNYTP 391


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 792 NYNNEPEIFKRGTILLRKSILHNKVNKSIIVDVHDDML 905
           ++N    I+++  ILLRK ILH+     + VD+  + L
Sbjct: 58  SHNGAIYIYQKNGILLRKMILHSASVVDLSVDLESENL 95


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 666 NYLCVHQPVSTSYNLLN 616
           N+LCV +P  TS NL N
Sbjct: 319 NFLCVEEPFHTSRNLAN 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,358,258
Number of Sequences: 5004
Number of extensions: 96395
Number of successful extensions: 264
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 605623328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)