Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_P03
         (1137 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical ...    30   2.6  
U56964-6|AAB54035.1|  848|Caenorhabditis elegans Hypothetical pr...    30   3.5  
M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical pr...    29   8.1  
AC098856-6|AAR12981.1|   93|Caenorhabditis elegans Hypothetical ...    29   8.1  

>AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical
           protein Y5H2B.1 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
 Frame = -3

Query: 472 RLYKQLSFLSTNEYSSLCPNDNKISLYSFKTVYAA*FINFRARKSLGFVKL-WSSANL*- 299
           RL+  L FL+ N +S  C    K+ +  + T+    + N+R +K L F+ + +  A +  
Sbjct: 2   RLFHFLKFLTINNFSRYCLKIVKVHII-WITIICIIYFNWRFKK-LDFMAIPYPPAVIKF 59

Query: 298 ----KHLPSNLITIHVFGNNESSCSNFFTYSKEL 209
               K+L SNL +    GNN    ++ +  SK L
Sbjct: 60  NTSAKYLSSNLASSSQLGNNIFEIASLYGLSKHL 93


>U56964-6|AAB54035.1|  848|Caenorhabditis elegans Hypothetical
           protein F52E4.7 protein.
          Length = 848

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 568 YFNGRCSKNLFQ*KTYDDENLLFIVVNSFAERRLYKQLSFLSTN 437
           +++GR SK + Q K Y D N     V+ F + RL   LS L +N
Sbjct: 317 FWHGRISKPMLQMKAYQDRNDELTAVDVFVD-RLMSHLSALFSN 359


>M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical
           protein B0303.9 protein.
          Length = 603

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +3

Query: 657 INNLYNTTFWTLILKGQLTPVQAEKRLSGTVSADKNEILFQEFNMNYNNEPEIFKRGTI 833
           +N  Y ++    +LK Q   +  EK   G +  +  +++FQ+   N++  PE F    +
Sbjct: 452 VNQSYGSSALNKVLKMQKMGLIREKGGGGKMQCEYAQMMFQQMKKNHDMLPEEFSEAKL 510


>AC098856-6|AAR12981.1|   93|Caenorhabditis elegans Hypothetical
           protein Y37F4.7 protein.
          Length = 93

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 600 YPCDENLIDYMKWRQADVHIN 662
           YP   NL  Y +W  ADVH+N
Sbjct: 7   YPHQWNLRQYRRWIPADVHVN 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,636,577
Number of Sequences: 27780
Number of extensions: 517237
Number of successful extensions: 1109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3078165110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)