Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O24
         (1121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   2.1  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   4.8  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   6.3  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    26   8.3  

>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 571 YLSXFCILGGFKFGGYCGTLSYTR 500
           Y + FC  GG  FGGY G   Y R
Sbjct: 448 YNTYFCFAGGAGFGGYGGHGGYVR 471


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 972 SNHFLQLLSAXNLFRTGSALKAIFQILFSTCRVPQHIHICHQLQ 841
           S+  L ++      R+ + L  +   L S+   P H+HICH ++
Sbjct: 196 SSRSLLIMDIPTTMRSNNGLSILASRLKSS-EAPMHVHICHAIK 238


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 975 SSNHFLQLLSAXNLFRTGSALKAIFQILFST 883
           S NHFLQ  S   + RTG++++ I +   ST
Sbjct: 302 SPNHFLQRSSRTTIRRTGASIRTIHRGKTST 332


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = -3

Query: 954 LLSAXNLFRTGSALKAIFQILFSTCRVPQHIHICHQLQE*FYQIL*GLHNDX*LLFHHPF 775
           LL A ++    S+L  ++ ILF      +H HI H             HN   LLF HPF
Sbjct: 153 LLVAVSVGIAHSSLSRLYTILFPYAG-SEHTHIGHS------------HNPSQLLFEHPF 199

Query: 774 ADLVLSWLWVAMED-LFSRWQT 712
             L L +  V +++ LF + +T
Sbjct: 200 MALGLIFGSVVLKEWLFRKTRT 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,611,980
Number of Sequences: 5004
Number of extensions: 65449
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 595662418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)