Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O24
         (1121 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-9|CAA84730.1|  219|Caenorhabditis elegans Hypothetical pr...    83   5e-16
Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical pr...    29   7.9  

>Z35663-9|CAA84730.1|  219|Caenorhabditis elegans Hypothetical
           protein T04A8.11 protein.
          Length = 219

 Score = 82.6 bits (195), Expect = 5e-16
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 4/161 (2%)
 Frame = +3

Query: 438 LKXFPPPKNYXHIEIPEXQRLR--VYDKVPQYPPNL--KPPKMQKXLRYMRGPEEVHTTL 605
           +K +  P  Y ++  P   +L+  V    P Y      K  K  K +   RG EEVHT L
Sbjct: 1   MKKYSFPVTYENVRFPPNGQLKLPVMPAEPFYDAEKGEKKYKSTKRMIEARGVEEVHTEL 60

Query: 606 QLKQYGVRATGGGRMKHEHFEMARLVVARKLDMKRMFAIWRIDPPWQPITXXXXXXXXXX 785
             +QYG+ A  GG +  + F+  +  + + L +   F++WR+D PW P T          
Sbjct: 61  IHEQYGLAAVSGGFIDSDDFKFIQDRINKNL-IDNQFSVWRVDAPWLPRTKKAQGTRLGG 119

Query: 786 XXXAXDHYVTPIKSGRIILEVGGKCEYAEVHDMLRIISERW 908
              +   YVTP+++ RIILEVGG     E    L  + ER+
Sbjct: 120 GKGSIQKYVTPVRANRIILEVGGHITEIEAKAFLLYLCERF 160


>Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical
           protein R06C1.3 protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 450 PPPKNYXHIEIPEXQRLRVYDKVPQYPPNLKPPKMQKXLRYMRGPEEVHTTLQ 608
           PPP N  H+  P+   L + D     PP   PP +       + P E  +T+Q
Sbjct: 294 PPPVNLDHLPPPDMSILSIDDDDDDLPPP-PPPLLMNTSIVHQLPAEAPSTIQ 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,398,913
Number of Sequences: 27780
Number of extensions: 379654
Number of successful extensions: 837
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3025992820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)