Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_O23
(1289 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.009
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.20
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.46
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.3
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.3 bits (80), Expect = 0.009
Identities = 31/126 (24%), Positives = 34/126 (26%), Gaps = 9/126 (7%)
Frame = +1
Query: 670 SXXXPXXXPXXXXPXXPXPPXHCXXXKXXLXXPXXXSPXXXPXXP------PXXPFPXPX 831
S P P P P P K + P +P P P P P P
Sbjct: 1118 SGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
Query: 832 XPXXPTXXXXLXPXPXXXXPXXXPXXXXXXPP---PPXXXPXXTPXXXXXPXPXXPXXXX 1002
P P + P P P PP P P TP P P P
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP-VPTAKA 1236
Query: 1003 PPXXPP 1020
PP P
Sbjct: 1237 PPVPAP 1242
Score = 34.7 bits (76), Expect = 0.028
Identities = 34/154 (22%), Positives = 40/154 (25%)
Frame = +1
Query: 589 PVXACSTXXYPXAIXXSAXPXTLXXXXSXXXPXXXPXXXXPXXPXPPXHCXXXKXXLXXP 768
PV S P + +A P + + P P P P + P
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIP---TSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
Query: 769 XXXSPXXXPXXPPXXPFPXPXXPXXPTXXXXLXPXPXXXXPXXXPXXXXXXPPPPXXXPX 948
P P P P P P P + P P P PP P P
Sbjct: 1080 SGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP--VPS 1137
Query: 949 XTPXXXXXPXPXXPXXXXPPXXPPPXXPXXXXPP 1050
P P P P PP P PP
Sbjct: 1138 GAP-PVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Score = 31.5 bits (68), Expect = 0.26
Identities = 32/126 (25%), Positives = 33/126 (26%), Gaps = 4/126 (3%)
Frame = +1
Query: 682 PXXXPXXXXPXXPXPPXHCXXXKXXLXXPXXXSPXXXPXXPPXXPFPXPXXPXXPTXXXX 861
P P P P P K + P P P P P P P P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAP----PVPVPSGAPPVPKPSVAAPPVPAPSGA 1158
Query: 862 LX-PXPXXXXPXXXPXXXXXXPP---PPXXXPXXTPXXXXXPXPXXPXXXXPPXXPPPXX 1029
P P P P PP P P P P P P PP PP
Sbjct: 1159 PPVPKPSVAAPPV-PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK-PSVGVPPVPPPSTA 1216
Query: 1030 PXXXXP 1047
P P
Sbjct: 1217 PPVPTP 1222
Score = 30.3 bits (65), Expect = 0.60
Identities = 38/191 (19%), Positives = 46/191 (24%), Gaps = 2/191 (1%)
Frame = +1
Query: 484 SPTXRRXPLSTTNXXXXPHPXXNLIRPXVXXQXHSPVXACSTXXYPXAIXXSAXPXTLXX 663
+P R P+ + P P + P + +P T P S P
Sbjct: 1006 APLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065
Query: 664 XX--SXXXPXXXPXXXXPXXPXPPXHCXXXKXXLXXPXXXSPXXXPXXPPXXPFPXPXXP 837
S P P P P K + P P P P P P
Sbjct: 1066 VPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVA-VPPVPAPSGAPPVP 1124
Query: 838 XXPTXXXXLXPXPXXXXPXXXPXXXXXXPPPPXXXPXXTPXXXXXPXPXXPXXXXPPXXP 1017
P+ P P P P P P P P P PP
Sbjct: 1125 K-PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183
Query: 1018 PPXXPXXXXPP 1050
P PP
Sbjct: 1184 PAAGVPPVPPP 1194
Score = 29.1 bits (62), Expect = 1.4
Identities = 31/127 (24%), Positives = 33/127 (25%), Gaps = 5/127 (3%)
Frame = +1
Query: 682 PXXXPXXXXPXXPXPPXHCXXXKXXLXXPXXXSPXXXPXXPPXX----PFPXPXX-PXXP 846
P P P PP K + P +P P P P P P P P
Sbjct: 1088 PSGIPPVPKPSVAAPPV----PKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Query: 847 TXXXXLXPXPXXXXPXXXPXXXXXXPPPPXXXPXXTPXXXXXPXPXXPXXXXPPXXPPPX 1026
P P P PP P P P P P PP PP
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAAPPVP------APSSGIPPVPK-PAAGVPPVPPPSE 1196
Query: 1027 XPXXXXP 1047
P P
Sbjct: 1197 APPVPKP 1203
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.20
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = +1
Query: 922 PPPPXXXPXXTPXXXXXP-XPXXPXXXXPPXXPPPXXPXXXXPP 1050
PPPP TP P P P PP PPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 922 PPPPXXXPXXTPXXXXXPXPXXPXXXXPPXXPPPXXPXXXXPP 1050
PPP P P P P PP PPP PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.46
Identities = 17/60 (28%), Positives = 17/60 (28%)
Frame = +1
Query: 766 PXXXSPXXXPXXPPXXPFPXPXXPXXPTXXXXLXPXPXXXXPXXXPXXXXXXPPPPXXXP 945
P P P PP P P P P P P P P PPP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP-AGMPAAPPLPPAAPAPPPAPAP 482
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/68 (26%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Frame = +1
Query: 826 PXXPXXPTXXXXLXPXPXXXXPXXXPXXXXXXPPPPXXXPXXTPXXXXXP--XPXXPXXX 999
P P P+ P P P PP P P P P P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 1000 XPPXXPPP 1023
PP P P
Sbjct: 475 APPPAPAP 482
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Frame = +1
Query: 925 PPPXXXPXXTPXXXXXPXPXX--PXXXXPPXXPPPXXPXXXXP 1047
PP P P P P P PP PPP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 922 PPPPXXXPXXTPXXXXXPXPXXPXXXXPPXXPPPXXPXXXXP 1047
PPPP P P P P P PP P P P
Sbjct: 1708 PPPPMSVP---PPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/83 (22%), Positives = 19/83 (22%)
Frame = +1
Query: 802 PPXXPFPXPXXPXXPTXXXXLXPXPXXXXPXXXPXXXXXXPPPPXXXPXXTPXXXXXPXP 981
PP P P P P P P P PP P P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP--PMPPKV 201
Query: 982 XXPXXXXPPXXPPPXXPXXXXPP 1050
P P P PP
Sbjct: 202 PPPPLSQAPVANTSSRPSSFAPP 224
Score = 26.2 bits (55), Expect = 9.8
Identities = 21/81 (25%), Positives = 21/81 (25%), Gaps = 6/81 (7%)
Frame = +1
Query: 826 PXXPXXPTXXXXLXP----XPXXXXPXXXPXXXXXXP--PPPXXXPXXTPXXXXXPXPXX 987
P P PT L P P P P P PP P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 988 PXXXXPPXXPPPXXPXXXXPP 1050
P P PP P PP
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPP 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,428
Number of Sequences: 5004
Number of extensions: 31081
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 703461012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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