Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O21
         (1207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   162   1e-40
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.56 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   6.9  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  162 bits (393), Expect = 1e-40
 Identities = 82/189 (43%), Positives = 108/189 (57%), Gaps = 2/189 (1%)
 Frame = +3

Query: 57  HTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PPSRITP--FNPFQ 230
           HT  V KGL+ G                    H  LSP  E+G + PP  I     +P +
Sbjct: 81  HTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPPVGIADKTIDPLE 140

Query: 231 IPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILQAYEYIEASFTI 410
           +PLLNT+IL+ SG ++T AH+SLI  N     + L++TI L F F   QAYEY  A FTI
Sbjct: 141 VPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGGQAYEYWNAPFTI 200

Query: 411 ADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HFVDVV 590
           +D +YG++F+ ATG HGIH+I+GT+ LL+        H +  HH GFE    Y HF DVV
Sbjct: 201 SDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYWHFCDVV 260

Query: 591 *LFLYISIY 617
            LFLY++IY
Sbjct: 261 WLFLYLTIY 269


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 24/82 (29%), Positives = 24/82 (29%)
 Frame = -2

Query: 1206 PPXPGPFXXVXXPXXGXXXAPXVFFPXXXPPXXGGXPXXXPPXGGXXXXPXXPXPXXPGX 1027
            PP P P   V  P       P         P  GG P   PP G     P  P P  P  
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPP------PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785

Query: 1026 PXXPXXGXXRXGAPKXXXPPFP 961
                  G  R  AP     P P
Sbjct: 786  ----SAGGSRYYAPAPQAEPEP 803


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect(2) = 1.9
 Identities = 18/63 (28%), Positives = 18/63 (28%)
 Frame = -3

Query: 1097 PXXPPPLGGXXXXXXPPXPXXPGXXGXXXXGXXGXGPPKXXXPLSPGXGRFLXAXXNXPP 918
            P  PPP  G      P  P  P               P    P S      L A    PP
Sbjct: 254  PPIPPPSNGTVSSP-PNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312

Query: 917  PPP 909
            PPP
Sbjct: 313  PPP 315



 Score = 20.6 bits (41), Expect(2) = 1.9
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 923 PPPPPRT 903
           PPPPPR+
Sbjct: 339 PPPPPRS 345


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 1100 NPXXPPPLGGXXXXXXPPXPXXPG 1029
            NP  PPP  G      PP P  PG
Sbjct: 8    NPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 21/82 (25%), Positives = 21/82 (25%)
 Frame = -2

Query: 1206 PPXPGPFXXVXXPXXGXXXAPXVFFPXXXPPXXGGXPXXXPPXGGXXXXPXXPXPXXPGX 1027
            PP P P      P      AP V  P    P         PP       P  P P     
Sbjct: 1150 PPVPAPSGAPPVPKPSVA-APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208

Query: 1026 PXXPXXGXXRXGAPKXXXPPFP 961
            P  P         P    PP P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVP 1230



 Score = 26.2 bits (55), Expect = 9.1
 Identities = 22/88 (25%), Positives = 22/88 (25%)
 Frame = -2

Query: 1206 PPXPGPFXXVXXPXXGXXXAPXVFFPXXXPPXXGGXPXXXPPXGGXXXXPXXPXPXXPGX 1027
            PP P P      P      AP V  P   PP         P        P  P P     
Sbjct: 1131 PPVPVPSGAPPVPKPSVA-APPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189

Query: 1026 PXXPXXGXXRXGAPKXXXPPFPGGGPXP 943
            P  P         P    PP P     P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,992
Number of Sequences: 5004
Number of extensions: 50806
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)