Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O19
         (1172 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   146   4e-36
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   146   5e-36
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   5.0  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  146 bits (355), Expect = 4e-36
 Identities = 66/116 (56%), Positives = 84/116 (72%)
 Frame = +1

Query: 220 LKNVLXKQACXPFRRFNGGVGRCAQAKQFGTTQGRWPKQSAEFLLQLLRXAESNADNKTL 399
           L NV   +   PFRRFNGGVGR AQ K+FG TQ RWP +S +F   LL+ AE+NA+ K L
Sbjct: 48  LDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGL 107

Query: 400 DVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 567
           D+D+L+I H+QVN AP  RRRTYRAHGR+  Y+SSP HIE+ ++E E+AV +   T
Sbjct: 108 DMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  146 bits (354), Expect = 5e-36
 Identities = 66/116 (56%), Positives = 83/116 (71%)
 Frame = +1

Query: 220 LKNVLXKQACXPFRRFNGGVGRCAQAKQFGTTQGRWPKQSAEFLLQLLRXAESNADNKTL 399
           L NV   +   PFRRFNGGVGR AQ K+FG TQ RWP +S  F   LL+ AE+NA+ K L
Sbjct: 48  LDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGL 107

Query: 400 DVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 567
           D+D+L+I H+QVN AP  RRRTYRAHGR+  Y+SSP HIE+ ++E E+AV +   T
Sbjct: 108 DMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 429 SGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 527
           S K RA   +T +  ++S   HQ +H +S PH S S
Sbjct: 340 SDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,190
Number of Sequences: 5004
Number of extensions: 40825
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 629529512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)