Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O19
         (1172 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   170   2e-42
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   113   3e-25
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    29   4.8  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   8.4  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  170 bits (413), Expect = 2e-42
 Identities = 81/119 (68%), Positives = 95/119 (79%)
 Frame = +1

Query: 220 LKNVLXKQACXPFRRFNGGVGRCAQAKQFGTTQGRWPKQSAEFLLQLLRXAESNADNKTL 399
           L +V   +   PFRRF+GG+GR AQ KQ+ TTQGRWP +SA+FLL LL+ AESNA+ K L
Sbjct: 50  LNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGL 109

Query: 400 DVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 576
           DVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 110 DVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 166


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  113 bits (271), Expect = 3e-25
 Identities = 55/75 (73%), Positives = 62/75 (82%)
 Frame = +1

Query: 352 LQLLRXAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 531
           L LL+ AESNA+ K LDVD LVI+HI V RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 532 EREDAVARVAPTDDA 576
           E+ED V++  PTDDA
Sbjct: 126 EKEDVVSK--PTDDA 138


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -2

Query: 649 LMSIPSSSSPFDAQAFSWKAFSSLGHHQ*GLP*RQHLRVR*DILRCGRETTCRG 488
           L+S   +   F + A+  +A ++L  H+  L    HL  + D+LRC R T+C G
Sbjct: 334 LLSGEGADELFGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +1

Query: 325 WPKQSAEFLLQLLRXAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 486
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 487 NPYMSSPCHIEVCLSER 537
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,843,453
Number of Sequences: 27780
Number of extensions: 266323
Number of successful extensions: 689
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3203378606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)