Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_O17
         (1234 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.1  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
 Frame = +2

Query: 737 PXXNPP----RGXPXPXPGXXXDXFPPPPPPPXXKXKKXPPPXGG 859
           P   PP    R  P   PG     + P P PP  + ++ P    G
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPG 151


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
 Frame = +3

Query: 945  PXXGXKKPXXXPPPPPXXXXXGXPPXX---PPPGG 1040
            P  G   P   P   P     G PP     PPPGG
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50



 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/36 (33%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = +3

Query: 927  PPPPXXPXXGXKKPXXXPPP-PPXXXXXGXPPXXPP 1031
            P P   P    + P    PP P      G PP  PP
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +2

Query: 749 PPRGXPXPXPGXXXDXFPPPPPPPXXKXKKXPPPXGGGXPG 871
           P  G P P P        P    P     + PPP  GG PG
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSP-PNPSQGPPP--GGPPG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 800  PPPPPPP 820
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 800  PPPPPPP 820
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.154    0.536 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 333,721
Number of Sequences: 438
Number of extensions: 16937
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42022050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)